Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0515 ATGGTCCATCGTTGCTGCAGTAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGATAAGCTTCTAAAGTATGTCACTACTCATGGCCATAAAAGTTGGAGTTCTGTACCAAAGTTTGCAGGCATTTTTCTCTTCATTGTATATATTGACATAGTTAGAGAACTCTCACATGACAAAGTTAGAGATGAATATATGGTTTTTTTATGTGCAGGGTTGCAGAGATGTGGAAAGAGTTGCAGATTGAGATGGATAAATTATTTGAGGCCAGATTTGAAGAGAGGTTCTTTCACTGATGAAGAAGAGCAAATCATAATTGATGTTCATAGAATTCTGGGAAACAGATGGGCCCAAATAGCCAAACACCTCCCTGGAAGAACAGATAATGAGGTGAAGAATTTCTGGAACTCTTGCATTAAAAAGAAGCTCATTTCTCAAGGGTTAGACCCACAAACCCACAATCTACTTTCTTCTCATAGGAGAAGCTCAACTTGCACTACTATTTCTAATACTAATCAATGTTCAAATTCCATTTTCTTTATGAGTTCACAATTACCAAACTCTCCCATGCAAACTAGACAAACTTTATCTTCATTACCTAAAGCTCAGCCAAACATTTTTCAAACTCCTTCTACCATTATTTCCTCTCAATCTCAACCACTCAATATTCTTCCATATGAACTCTCAAATTTGCCTTATGAACCATCAATTGAGAACCCTTCCAATATATGTTCTTCTTCTTACATGAACCCATCTGAGGTAAGATTGTCTAACAATGAGAATAATAACATCTGGGTTTCAAGTGTTGATGCTGAAGATTTTAGAGTTCAACTATTAGAAGAAGAAGAAGGACTAGAATCACTACAGGTGCAGGTGGAGAAGGACAAGGCTTGTGAGAAGAGAATTGATGAAATCAAAGAAGCTGGGAAGGATAATCTTGAAACAAATGCTTCTTTGGAGAGCTCTAACTTTGATTTTGGATTGTTGGAGAGTTTACTTAGTTCTGACTTTATGTCCCATGATCTCAACTATATAGATGAACTTGCATGGAATTTTTAG 1065 0.3653 MVHRCCSKQKIKRGLWSPEEDDKLLKYVTTHGHKSWSSVPKFAGIFLFIVYIDIVRELSHDKVRDEYMVFLCAGLQRCGKSCRLRWINYLRPDLKRGSFTDEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHNLLSSHRRSSTCTTISNTNQCSNSIFFMSSQLPNSPMQTRQTLSSLPKAQPNIFQTPSTIISSQSQPLNILPYELSNLPYEPSIENPSNICSSSYMNPSEVRLSNNENNNIWVSSVDAEDFRVQLLEEEEGLESLQVQVEKDKACEKRIDEIKEAGKDNLETNASLESSNFDFGLLESLLSSDFMSHDLNYIDELAWNF 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0515 354 Gene3D - 98 170 - -
Lal20g0515 354 Gene3D - 10 96 - -
Lal20g0515 354 SUPERFAMILY Homeodomain-like 76 148 IPR009057 -
Lal20g0515 354 SUPERFAMILY Homeodomain-like 7 44 IPR009057 -
Lal20g0515 354 ProSiteProfiles Myb-like domain profile. 8 90 IPR001005 -
Lal20g0515 354 CDD SANT 98 138 IPR001005 -
Lal20g0515 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 91 145 IPR017930 -
Lal20g0515 354 PANTHER BNAC05G40480D PROTEIN 1 45 - -
Lal20g0515 354 PANTHER BNAC05G40480D PROTEIN 72 341 - -
Lal20g0515 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 44 IPR017930 -
Lal20g0515 354 PANTHER MYB DOMAIN PROTEIN 55 1 45 - -
Lal20g0515 354 PANTHER MYB DOMAIN PROTEIN 55 72 341 - -
Lal20g0515 354 ProSiteProfiles Myb-like domain profile. 91 141 IPR001005 -
Lal20g0515 354 SMART sant 12 92 IPR001005 -
Lal20g0515 354 SMART sant 95 143 IPR001005 -
Lal20g0515 354 Pfam Myb-like DNA-binding domain 13 90 IPR001005 -
Lal20g0515 354 Pfam Myb-like DNA-binding domain 96 139 IPR001005 -
Lal20g0515 354 CDD SANT 16 90 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0515 Lal-Chr20 4409187 4410961 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0515 1 163 MYB Transcription Factor Family AT3G12720 70.552 1.84e-81 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal20g0515 Myb_DNA-binding 4.4e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0515 K09422 - gmx:100791209 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0515 20 4409187 4410961 Lal20g0515 20 4409187 4410961 ECH