Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0512 ATGGAAAGAATGTTCCCTCCAAAGAAGCCCTCTAATATGAATTCTCATGATAGACCCATGTGTGTTCAAGGGGACTCGGGTCTTGTCCTTACCACTGACCCTAAACCTCGCCTTCGTTGGACTGTTGAACTCCATGAACGTTTTGTTGATGCTGTTACTCAACTTGGAGGACCAGATAAGGCAACTCCTAAAACCATTATGAGGGTTATGGGTGTGAAGGGTCTCACTCTTTACCACCTAAAGAGTCACCTCCAGAAATTTAGGCTTGGGAAGCAGCCCCACAAGGAATTCAATGATCACTCGATTAAGGATGCTTCAGCTTTAGAACTGCAACGAAATACTGCCTCCTCTTCAGCCATGATTGGCCGCAACATGAATGAGTATGCGTCACTTCTTATATTACATCTTCTACCCTTTCTTCTCTCCTACGTCCAAAAGCACCTTCAGCTAAGGATTGAGGCTCAAGGGAAATACATGCAAAGCATATTGGAGAAGGCTTATCAAACACTTGCAGGTGAAAACATGGCATCTGCAGCTACTAACATGAAGTGTATGGTTCCTCAACAAAGCATTCCTGACATGGGAGTCATGAAAGAATTTGGCTCCCCTCTTAATTTCTCTTCTTTCCAAGATCTTGATATATTTGGAGGTGACCAAATTGATCTTCAGCCAAACATGGAGAAGCCACCCCTTGATGGGTTTATGCCAATTAATGAAGACTTATGCCTTGGGAAAAAGAGGTCAAACCCTTATATTGGGAGTGGAAAGAGCCCTTTGATTTGGAGTGATGATCTAAGGCTTCAAGATTTGGGGACAGCATCATCATGCCTTGGCCCTCAAGATGACCCTTTCAAAGGTGACCAGATTCAACTTGCACCATCATCAATGGATAGAGGCACTGAGATTGATTCTATGTCCGAAATGTACGACGACACAAAGCCCTCATCACTCCATGGGGCTGAGAAGAAATTTGATGCATCTTTGAAGCTTGAAAGGCCATCACCAAGAAGAACACCTATTCAAGTAGAAAGGATGAGTCCTATGATCAGCACTGGTTCAATGGCACAAGGTAGAAGCTCACCATTTGGGTGA 1092 0.4396 MERMFPPKKPSNMNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDASALELQRNTASSSAMIGRNMNEYASLLILHLLPFLLSYVQKHLQLRIEAQGKYMQSILEKAYQTLAGENMASAATNMKCMVPQQSIPDMGVMKEFGSPLNFSSFQDLDIFGGDQIDLQPNMEKPPLDGFMPINEDLCLGKKRSNPYIGSGKSPLIWSDDLRLQDLGTASSCLGPQDDPFKGDQIQLAPSSMDRGTEIDSMSEMYDDTKPSSLHGAEKKFDASLKLERPSPRRTPIQVERMSPMISTGSMAQGRSSPFG 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0512 363 MobiDBLite consensus disorder prediction 344 363 - -
Lal20g0512 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 313 - -
Lal20g0512 363 MobiDBLite consensus disorder prediction 323 338 - -
Lal20g0512 363 Pfam Myb-like DNA-binding domain 38 86 IPR001005 -
Lal20g0512 363 Pfam MYB-CC type transfactor, LHEQLE motif 144 169 IPR025756 -
Lal20g0512 363 Gene3D - 34 92 - -
Lal20g0512 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 313 IPR044848 GO:0003700
Lal20g0512 363 SUPERFAMILY Homeodomain-like 34 90 IPR009057 -
Lal20g0512 363 MobiDBLite consensus disorder prediction 323 363 - -
Lal20g0512 363 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 35 90 IPR006447 GO:0003677
Lal20g0512 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 92 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0512 Lal-Chr20 4376965 4379407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0512 4 363 G2-like Transcription Factor Family AT1G79430 53.947 2.25e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lal20g0512 Myb_DNA-binding 2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0512 - - ccaj:109805894 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0512 20 4376965 4379407 Lal20g0512 20 4376965 4379407 ECH
Lal20g0512 20 4376965 4379407 Lal11g1550 11 18604443 18606678 LSH