Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0510 ATGGCGTTATCATCAGTAACATCGAACCCTCACTTGAAACTGCTATCTTCAAAGTTCCTCTCTCGTTCTTCCCATCTACTCTCCATTCACTTGCAGAGGCGGTATTCAACTCCTATCCTCACTCGAAAGATAAGCATGGATGCTCGGAGTGTTGCTTCTCAGCTTAATACTTCTGGCCTTTTGAAGACTCAGGGCCTTATCGGAGGGAAATGGAGTGATGCTTATGATGGGAAAACCATAAAGGTTTACAATCCAGCAACAGGTGAATCCATAGCAGATGTTGCATACATGGGTGCAAGAGAGACGAATGATGCAATTTCTTCAGCCTATGATGCGTTTAGTTCATGGAGCAAAATCACTGCTGCTGAGAGGAGTAAATATCTGAGGAAATGGTATGATCTGCTAATGGCAAATAGAGAAGAGCTTGCACAACTTATGACATTGGAGCAAGGCAAGCCTCTAAAAGAGTCTTTGGGTGAGATAAGCTATGGGGCTGGCTTTATCGAGTTTGCATCTGAGGAAGCAAAACGTGTATATGGCGATATAATTCCTTCACCTCTATCTGATCGGAGGCTATTTGTTTTAAAGCAGCCTGTGGGGGTTGTAGGTGCAATCACACCATGGAACTTTCCCTTGGCTATGATTACACGAAAGGTTGGTCCAGCCCTAGCATGTGGCTGTACAGTGGTCATAAAACCCTCTGAACTTACGCCTCTCACTGCTTTAGCTGCTGCAGAACTCTCTATTCAAGCTGGAATACCTGCGGGTGTTGTGAATGTGGTTATGGGAAATGCTCCTGAAATTGGGGACGCTATAGTTGAAAGTCCACAGGTACGCAAGATCACATTCACGGGCTCAACAGCTGTTGGAAAGAAATTGATGGAAGGTTCTGCGAAGACAGTAAAAAAAGTATCCCTGGAACTTGGTGGCAATGCACCTTGCATAGTTTTTGATGATGCTGACCTGGATGTTGCTGTAAAAGGAACTATTGCAGCGAAGTTCCGTAATAGTGGACAAACATGTGTTTGTGCTAATAGAATTCTCGTCCAAGAAGGTATATATGACAAATTTGCAGAGGCTTTGGTTGATGCTGTCCAGAAGATGAAAGTTGGGGATGGTTTTGGTGAAGATGTTGTTCAGGGCCCTCTGATCAACGACGCTGCTGTGGAAAAGGTGGAGAACTTACTTAATGATGCTACATCGAAGGGGGCTAAAATAATTTTGGGGGGCAAAAGACATAGTCTTGGATTAACCTTTTATGAACCAACAGTCGTCAGTGATGTCAGTAATGATATGCGCATAGCAAGAGAGGAAGTATTTGGTCCTGTCGCGCCCCTTTTGAGGTTCAAAACTGAAGAGGATGCTATTGCAATTGCTAACGACACTAATGCAGGTCTGGGTTCATACGTATTTACCAACAGTATCCAACGATCATGGCGTGTTGCTGAGGCTCTTGAATATGGACTTGTGGGTGTCAATGAAGGAGTAATTTCAACTGAGGTTGCACCGTTTGGCGGTTTTAAACAGTCCGGCCTTGGAAGAGAAGGCTCCAAATATGGGTTGGATGAATATTTGGAGATCAAATATGTGTGCATGGGAAACATGAACAAATTATGA 1617 0.4397 MALSSVTSNPHLKLLSSKFLSRSSHLLSIHLQRRYSTPILTRKISMDARSVASQLNTSGLLKTQGLIGGKWSDAYDGKTIKVYNPATGESIADVAYMGARETNDAISSAYDAFSSWSKITAAERSKYLRKWYDLLMANREELAQLMTLEQGKPLKESLGEISYGAGFIEFASEEAKRVYGDIIPSPLSDRRLFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAELSIQAGIPAGVVNVVMGNAPEIGDAIVESPQVRKITFTGSTAVGKKLMEGSAKTVKKVSLELGGNAPCIVFDDADLDVAVKGTIAAKFRNSGQTCVCANRILVQEGIYDKFAEALVDAVQKMKVGDGFGEDVVQGPLINDAAVEKVENLLNDATSKGAKIILGGKRHSLGLTFYEPTVVSDVSNDMRIAREEVFGPVAPLLRFKTEEDAIAIANDTNAGLGSYVFTNSIQRSWRVAEALEYGLVGVNEGVISTEVAPFGGFKQSGLGREGSKYGLDEYLEIKYVCMGNMNKL 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0510 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Lal20g0510 538 TIGRFAM SSADH: succinate-semialdehyde dehydrogenase 82 528 IPR010102 GO:0009013|GO:0009450
Lal20g0510 538 Pfam Aldehyde dehydrogenase family 73 530 IPR015590 GO:0016491
Lal20g0510 538 CDD ALDH_F5_SSADH_GabD 82 532 - -
Lal20g0510 538 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 535 - -
Lal20g0510 538 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 535 - -
Lal20g0510 538 SUPERFAMILY ALDH-like 60 535 IPR016161 GO:0016491
Lal20g0510 538 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 306 313 IPR029510 GO:0016491
Lal20g0510 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 310 499 IPR016163 GO:0016620
Lal20g0510 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 77 524 IPR016162 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0510 Lal-Chr20 4351202 4363215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0510 18 537 Aldehyde Dehydrogenase Gene Family AT1G79440 76.731 0.0 816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0510 K17761 - gmx:100808318 892.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0510 20 4351202 4363215 Lal20g0510 20 4351202 4363215 ECH