Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0504 ATGAGACATTTGCATGGGGACAGAATTCAAGTCTCTGTCCGAAAGGATCAGTTTAACGAATGGAGAGAACATTTGGTTGAGAGTTCAACTTATGTCATGCACAATTTTAATGTCATGCACAATGACATCCAATTTAAGGCATGTGACCATGTTTACAGAATGCAATTCACTGCCGGTACCACTCTCAAACAAAGAGAATTTCCTGATATTCCTGAATGGGAATATGATTTCAAAAAGTTTGGTGACATCCTTGACGGAAACGGTAGAAATGATTTACTAATAGATATCATTGGTGCTTTTGATAAGGTAATATTCTCCCAAACACAAGGCAATTTGAAGAAAGTTGTCTTCAGTTTGAAAGATTTTAGTGGAGATTTCATTAACTGTACTCTGTGGGAATCACATGCTACCAAATTCGAGAAACACTATAACAACCACTGTAATGTTGAACCTATGATAATTTTGTTAACTCATGCTAGAATCAAAGAAGGACAAGGTAAGTATCCACATAGCATTTCCAACTCATGGTGCGGATCAAAAATATTGATTGGTGAAGAAATTCCCAACATTGACAAGTACAAACAAAGTCTATCATGTGATACATTGAGCCATAGTAACAGCCAAATGTCACAATATTCTAACTTATCTGATGATGAGCGATTTATGTATAAAGCTGAAGTCAAGAGTATTACAGAAATTTCTGCAATTACATCTTCTGAGGAAATAACCTGTGTAACAGTTGGGACGACAACAATGTTTGTTGTTGGCAAACACGGATGGTACTATGAAGGTTGTACTAAATGTACAAAGAAGACTGATGTTAAAGATGGCCCATTCACATGCAAGTATAAACTGGATATTAAAGTCATACACCAACATGGGAGTGGAAGGTTTGTTTTCTGGGATTGTCAATGTGCTGACATCATTGGCGTATCGGCATCTGACTTAAGAGATCAGATGGTTGCAGAAGGTGAAGATGATCCCAAGGCATTCCCTTTAATTCTGGATGAACTGCTTGCAAGAACAATGGCTCTAAGGGTCAAAGTGCAACCCTCATACAACCAATCTTCTGTTATCAGACTTTCTGAGGATCCAAATTTAATCAAGAATATACTTGATCAAATTGTCATATTTCAGTCTGTGTCTATTACTGCTGATCATGATCCAGACCTTTTACAAGTTTTAACTCCAGCCAAACGATTATCGGCTGACATTGACGTGGACCTCATACAAAGTCCACTGTATAATTCTACTCAGTTGTCATCTTCAAAGGTGGCAAAGCATATCAACATTGACTGA 1299 0.3734 MRHLHGDRIQVSVRKDQFNEWREHLVESSTYVMHNFNVMHNDIQFKACDHVYRMQFTAGTTLKQREFPDIPEWEYDFKKFGDILDGNGRNDLLIDIIGAFDKVIFSQTQGNLKKVVFSLKDFSGDFINCTLWESHATKFEKHYNNHCNVEPMIILLTHARIKEGQGKYPHSISNSWCGSKILIGEEIPNIDKYKQSLSCDTLSHSNSQMSQYSNLSDDERFMYKAEVKSITEISAITSSEEITCVTVGTTTMFVVGKHGWYYEGCTKCTKKTDVKDGPFTCKYKLDIKVIHQHGSGRFVFWDCQCADIIGVSASDLRDQMVAEGEDDPKAFPLILDELLARTMALRVKVQPSYNQSSVIRLSEDPNLIKNILDQIVIFQSVSITADHDPDLLQVLTPAKRLSADIDVDLIQSPLYNSTQLSSSKVAKHINID 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0504 432 PANTHER REPLICATION FACTOR A 1, RFA1 17 303 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lal20g0504 432 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 17 303 - -
Lal20g0504 432 SUPERFAMILY Nucleic acid-binding proteins 228 354 IPR012340 -
Lal20g0504 432 Pfam Domain of unknown function DUF223 5 90 IPR003871 -
Lal20g0504 432 Gene3D - 4 64 IPR012340 -
Lal20g0504 432 CDD RPA1_DBD_A_like 5 61 - -
Lal20g0504 432 SUPERFAMILY Nucleic acid-binding proteins 75 203 IPR012340 -
Lal20g0504 432 CDD RPA1_DBD_B_like 113 197 - -
Lal20g0504 432 Gene3D - 213 375 IPR012340 -
Lal20g0504 432 Gene3D - 68 206 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0504 Lal-Chr20 4308620 4311806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0504 5 362 Core DNA Replication Machinery Family AT5G08020 21.762 2.60e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0504 - - lang:109343677 587.8