Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0494 ATGGATAAACCAGAGCATGCTCAGCAGCAGCAGCAACATCACGCAACGAGTGTTGCAGCAGATGGTAGCCAAATGGTGTATCCTTCGAAATACCAGACTGATGCGGGTGTTGCAGCAGATGGTAGCCATCCTTCGAAATACCAGACTAATGCAACCCTGCACCATCTTACAAAGCAGCAAGCACAACTTTTCCAGCAGCGACATCAAATGTTCTGGGCAAGCCAAATGCAAGAAATTGAGCAAACAGTTGACTTCAAGAACTATAGTTTCCCAATAGCTCGGATCAGAACAATAATGAGAGCTGATGAAGACGTCCGGATGATTTCAGGAGAAGCTCCAGTCCTATTTGCGAAAGCTTGTGAGATATTCACCTTGGATCTGACTATGCGATCTTGGATCCACACCGAAGAGGATGACAGGAGAACAATACAAAGGCGTGATATAGCGCTTGCTCTGGCTAGTTATTATGTTCTTGATTTCTTGCTTGATATTTTTCCAAAAGATGAGTTGGAAGGCCTTGGAATAACAAAGCCTACTCTTCCAAAATTGAGTTCTCCGGCCTATACGCCCTATGCGCCGTATTTTTATCCACCACCAGAGCATCCTTTAGGACCACCTACAAGGATGTTCATGGGAAATCCAGTTGTTGATCTAGTTGCACCATATTATACTCAGCAGCCATCACCACATTATCTTTTAGGACCACCTACAGGGATGATCATGGGAAATTCAGTTGTTGATCAAGCTACATTATATTATACTCAGCAGCCACCACCAGAGTATCTTTTAGGACCACCTACAGGGATGATCATGGGAAATTCAGCTGTTGATCAAGCTGCACCATATTATACTCAGCAGCCACCACCAGAGCATCCTTTAGGACCACCTACAGGGATGATCATGGAAAATCCAGGTGTTGATCAAGCTGCACCATATTATACTCAACAGCCACCACTAGAGCATCCTTTAGGACTACCTACAGGGATGATCATGAAAAATCCAGCTGTTGATCAAGTTGCACCATATTATACTCAGCAGCCACCACCAGAGCATCCTTTAGGACCACCTACAGGGATGATCATGGGAAATCCAGCTGTTGATCAAGCTGCACCATATTATACTCAGCAGTCACCACCAGAGCATCCTGTAGGACCACCTACAGGGATGATCATGGAAAATCCAGGTGTTGATCAAGTTGCACCATATTATACTCAGCAACCACCACCAGAGCATCTTTTAGGAATACTTACAGAGATGATCATGGGAAATCCAGTTGTTGATCAAGCTGCACCATGTTATACTCAGCAACCACCACCAGAGAATCCTTTAGGATCACCTACAGGGATGATCATGGGAAATTCAGTTGTCGATCAAGTTGCACCATATTACACTCATCAGCCACCACCAGAGAATCCTTTAGGATCACCTACAGGAATGATCATGGGAAATTCAGCTGTTGATCAAGCTGCACTACATTATACTCAGCAGCCTCAACCTCCCATGCCTTTCATGCCATGGTCGGATGCACAACCTCCGCAACACCAACAGCAGCCTCAATCTCCCATGCCTTTCATGCCATGGCCGGATGCCCAGCCTCAATCTCCCATGCCTTTCACGCCATGGCCGGATGCCCAACCTCCGCAACAGCAACAGCAGCCTCAATCTCCCATGCCTTTCATGCCATGGCCGGATGCACAACCTCCGCAATTGCAACAGCAGCCTCAATCTCCCATGCCTTTCATGCCATGGCCGGATGCACAACCTCCGCAACAGCAACAACAGCCTCAATCTCCCATGCCTTTCATGCCATGGCCGGATGCACAACCTCTGCAACAGCAACAGCAACAGCAGCCTCAATCTCCCATGCCTTTCATGCCATGGTCGGATGCACAACCTCCGCAACAGCAACAGCAGTCTCAATCTCCCATGCCTTTCATGCCATGGCCGTATGCAGAACCTCCACAACAACAACAGCAGCCACAACATCAAGAAGAAACTGATCCTTGA 2007 0.4728 MDKPEHAQQQQQHHATSVAADGSQMVYPSKYQTDAGVAADGSHPSKYQTNATLHHLTKQQAQLFQQRHQMFWASQMQEIEQTVDFKNYSFPIARIRTIMRADEDVRMISGEAPVLFAKACEIFTLDLTMRSWIHTEEDDRRTIQRRDIALALASYYVLDFLLDIFPKDELEGLGITKPTLPKLSSPAYTPYAPYFYPPPEHPLGPPTRMFMGNPVVDLVAPYYTQQPSPHYLLGPPTGMIMGNSVVDQATLYYTQQPPPEYLLGPPTGMIMGNSAVDQAAPYYTQQPPPEHPLGPPTGMIMENPGVDQAAPYYTQQPPLEHPLGLPTGMIMKNPAVDQVAPYYTQQPPPEHPLGPPTGMIMGNPAVDQAAPYYTQQSPPEHPVGPPTGMIMENPGVDQVAPYYTQQPPPEHLLGILTEMIMGNPVVDQAAPCYTQQPPPENPLGSPTGMIMGNSVVDQVAPYYTHQPPPENPLGSPTGMIMGNSAVDQAALHYTQQPQPPMPFMPWSDAQPPQHQQQPQSPMPFMPWPDAQPQSPMPFTPWPDAQPPQQQQQPQSPMPFMPWPDAQPPQLQQQPQSPMPFMPWPDAQPPQQQQQPQSPMPFMPWPDAQPLQQQQQQQPQSPMPFMPWSDAQPPQQQQQSQSPMPFMPWPYAEPPQQQQQPQHQEETDP 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0494 668 MobiDBLite consensus disorder prediction 607 644 - -
Lal20g0494 668 Pfam Core histone H2A/H2B/H3/H4 42 152 IPR007125 GO:0003677
Lal20g0494 668 SUPERFAMILY Histone-fold 54 161 IPR009072 GO:0046982
Lal20g0494 668 MobiDBLite consensus disorder prediction 495 668 - -
Lal20g0494 668 MobiDBLite consensus disorder prediction 516 605 - -
Lal20g0494 668 Gene3D Histone, subunit A 51 167 IPR009072 GO:0046982
Lal20g0494 668 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 20 191 - -
Lal20g0494 668 MobiDBLite consensus disorder prediction 1 23 - -
Lal20g0494 668 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 20 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0494 Lal-Chr20 4194869 4196875 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0494 69 196 CCAAT-HAP5 Transcription Factor Family AT1G56170 63.359 2.18e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lal20g0494 Histone 6.5e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0494 K08066 - gmx:100796987 222.631