Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0493 ATGGATCCAAATCTCCTTTTCGATCAGAGCTTCCCTCTCTTCAAACCCTCCAAAATTCCCACACCAGTCACCGCCACCGTCAAAAACCTTAACTCAAACCCCGAGCACCACGACGTTCCCGACGACACGGACGACCTTCCCGCCGCCACCGAAGCCGCCACATTCGCCGACCTAGGACTCTCCGAGTGGGCGGTGAAAACCTGCAAGGAGCTCGGGATGCGAAATCCCCGTTCTGTACAGTCTCGATGCATCCCGAAGGTTCTAGAAGGCCGCCATGTCCTCGGCATCGACGAGACCGGTAGTGGCAAGACTGCCGCGTTCGCCCTGCCCATCCTCCACCGCTTATCAGAGCACCCGTTCGGTGTCTTCGCTCTGGTGGTGACGCCGACGCGGGAGCTCGCTTTCCAGCTGGCAGAGCAGTTCAGAGCCCTCGGCTCCTGCCTGCACCTACGGATATCTGTGGTAGTTGGTGGAATGGACATGCTCAAGCAGACTAAGGACTTGGTGGCCCGGCCCCATGTCGTTATCGCCACGCCGGGGAGGATCAAGGTTTTGCTTGAACAGAATCCTGATATTGCTCCGGTTTTCTCCAGGACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTCCTGGATGTTAGTTTTCAGGAGGAATTGAAATTTATCTTTCGGTGCTTACCAGAAAATCGGCAAAATTTGTTCTTTTCTGCAACAACGACAAGTAATCTGCAAAAGTTGTGTGAGCGTTACCAAGATAAGCTGTACGTGTATGAAGCTTATGAAGGCTTGAAAACAGTTGAAACACTTAAGCAACAGGTTATATTTATCCCTAAAAAGGTGAAGGAGGTATATTTGATGCATATTTTGTCTAAAATGGAGGAGATGGGCGTTCGATCTGCCATTATATTTATCTCCACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTTTATATTCATTCAGATCGCAGTCTCAGAGGCTTCATGCACTACAACAATTTAAATCAGGAAAGGTTTCTATACTGCTAGCAACTGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTTGACCTTGTTATCAATTACGATGTTCCAAGGTTTCCACGAGATTATATTCACCGTGTTGGTCGTACTGCAAGAGCTGGTAGAGGAGGATTGGCCATGAGCCTTGTCACCCAGAATGATGTTGATCTCATTCGTGAGATAGAAGCTCTTATTGAAAGGCAAATTGAACTGATTGAATACAAAGAAAATGAAGTGCTATCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCGCAAATGAAGATGTTGGATGATGGCTTTGAGGAGAAAGCAAAAGAGCGAAAAAAACAAAAACTGAAAATGCTATCAGAGAAAGGATTGTTGAAGAAAGGAAGTAAGAAGAGAAGGAAAAATAAAGAATTTGCAGATGAAGGAAAAAAGCATAAAAGAGAGGAGCCGGAAGCACTATCAGATAAAGCATCACTGAAGAAAAGGAGTAAGAAGATGGAGTAA 1551 0.4623 MDPNLLFDQSFPLFKPSKIPTPVTATVKNLNSNPEHHDVPDDTDDLPAATEAATFADLGLSEWAVKTCKELGMRNPRSVQSRCIPKVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRISVVVGGMDMLKQTKDLVARPHVVIATPGRIKVLLEQNPDIAPVFSRTKFLVLDEADRVLDVSFQEELKFIFRCLPENRQNLFFSATTTSNLQKLCERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKEVYLMHILSKMEEMGVRSAIIFISTCRDCHRLSLMLEVLDQEAAALYSFRSQSQRLHALQQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYIHRVGRTARAGRGGLAMSLVTQNDVDLIREIEALIERQIELIEYKENEVLSLMKKVFSAKNVAQMKMLDDGFEEKAKERKKQKLKMLSEKGLLKKGSKKRRKNKEFADEGKKHKREEPEALSDKASLKKRSKKME 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0493 516 SMART ultradead3 72 272 IPR014001 -
Lal20g0493 516 Gene3D - 43 255 IPR027417 -
Lal20g0493 516 SMART helicmild6 311 392 IPR001650 -
Lal20g0493 516 PANTHER ATP-DEPENDENT RNA HELICASE DDX49-RELATED 51 485 - -
Lal20g0493 516 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Lal20g0493 516 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 121 412 IPR027417 -
Lal20g0493 516 CDD DEADc_DDX49 55 258 - -
Lal20g0493 516 Pfam Helicase conserved C-terminal domain 286 392 IPR001650 -
Lal20g0493 516 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 431 IPR001650 -
Lal20g0493 516 Coils Coil 409 429 - -
Lal20g0493 516 CDD SF2_C_DEAD 269 401 - -
Lal20g0493 516 PANTHER RNA HELICASE 51 485 - -
Lal20g0493 516 Gene3D - 256 431 IPR027417 -
Lal20g0493 516 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
Lal20g0493 516 MobiDBLite consensus disorder prediction 460 474 - -
Lal20g0493 516 MobiDBLite consensus disorder prediction 483 516 - -
Lal20g0493 516 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 84 257 IPR014001 -
Lal20g0493 516 MobiDBLite consensus disorder prediction 460 516 - -
Lal20g0493 516 Pfam DEAD/DEAH box helicase 78 246 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0493 Lal-Chr20 4194407 4202730 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0493 54 405 Eukaryotic Initiation Factors Gene Family AT3G13920 32.386 8.24e-54 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0493 K14778 - gmx:100798597 756.518