Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0475 ATGCATTCTCTCTATCTTCTCATCCACCATTTCTCCATTTCCAAGCACAATCCAATCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCACTCTTCACTATTATTCATACCCTTAATAGTCTCTTTCAAATGGTTTCTGCAACTGCAACACTCTTTTCTTATAATTTCACTGATCATCATATTCTCTCTCCTTTTCCAACCATTCCTAAATCCTTCATTGGTCTTTGCAAACCCTTTCATTCAAGGCTACCCACTTCTATTCACTTACATTTCACACCATCTTCCTTCATTGTCAGAGCTGTTATAAAGTGGCGATGTCCAAAGCAAATTCACCCTCCCAATTGTGACAGAGGTTTCCAAAAAAAGGTCCTGTATCTGGAGTCCATTGGTATCGACTCTTTCTCATTGATTGAAAATCATCCGATGTTGATCTCCGCTTCCCTTTCTGACATTAAATCCACTGTGGAATACATGACCTCCATGGATTTCACTGCAATTGAGTTTCGCCGCATAGTTGGCATGTGCCCAGAGATACTGACCACAAAACTTTCAGATGTCATACCTGTCTTCACTTTCCTTCTCCGTGAGGCTCATGTAAAGGGCTCCGATATTAAGCATGCCATAAATCGTCGTCCAAGGTTGCTTGTCTGCAGTGTTGATAAGCAACTTCGACCTACCCTATATTTCCTCCAAAGTATTGGCATAGAAGAGGTAAGCAAGCACACCTATTTGCTATCATGTAGTGTTGAAGAAAAATTTATGCCCAGAATTGATTACTTTGAGAATATTGGCTTTTCTCGCCGTGACTCCACTATAATGTTTCGAAGATTTCCTCCGCTGTTTTGTTATAGTATTAAGAATAACTTGGAGCCTAAATACAATTACTTTGTGGTGGAGATGGGGAGAGACTTGAAGGAGCTGATAGAATTTCCACAGTATTTCTCATTTAGCTTAGAGAATAGAATTAAGCCTCGGCATAGACGCTGTGTAGAAATGGGAGTGTGTTTTCCTCTCCCTACATTGTTAAAAACAAGCGGAATGCGATTTCGAAATCGATTAGATGTATGTTTAAATTCTTCAACTCCTTTGAAAACATCTCCTCTATGGTCTGCTGGTGGTTACATTGATTAA 1128 0.3954 MHSLYLLIHHFSISKHNPISSSSSSSSSSLFTIIHTLNSLFQMVSATATLFSYNFTDHHILSPFPTIPKSFIGLCKPFHSRLPTSIHLHFTPSSFIVRAVIKWRCPKQIHPPNCDRGFQKKVLYLESIGIDSFSLIENHPMLISASLSDIKSTVEYMTSMDFTAIEFRRIVGMCPEILTTKLSDVIPVFTFLLREAHVKGSDIKHAINRRPRLLVCSVDKQLRPTLYFLQSIGIEEVSKHTYLLSCSVEEKFMPRIDYFENIGFSRRDSTIMFRRFPPLFCYSIKNNLEPKYNYFVVEMGRDLKELIEFPQYFSFSLENRIKPRHRRCVEMGVCFPLPTLLKTSGMRFRNRLDVCLNSSTPLKTSPLWSAGGYID 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0475 375 PANTHER OS03G0360600 PROTEIN 106 361 - -
Lal20g0475 375 PANTHER CGI-12 PROTEIN-RELATED 106 361 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 236 265 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 133 163 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 270 302 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 SMART mt_12 303 334 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 Gene3D Transcription termination factor 3, mitochondrial 182 355 IPR038538 -
Lal20g0475 375 Pfam mTERF 100 196 IPR003690 GO:0003690|GO:0006355
Lal20g0475 375 Pfam mTERF 194 348 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0475 Lal-Chr20 3935875 3944044 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lal20g0475 mTERF 6.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0475 K15032 - gmx:100794678 530.791