Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0454 ATGGTGAAACCTGGACGAGGTCGTCGTTCACCACCATCTGGTTCCGTTTCTGGTTCATCCTCTCGTTCTCGATCTTCTTCTCCTTCCTCTCGTTCTCGATCTTCTTCTCGCTCTCGTTCCAGATCCTTCTCTTCGTCCTCTCCCTCTCGCAGTTCCCGAAGCCCTAGCCGAAGCCCTCCGCCTCAGAGAAAAAAGAGTCCTGCCGATGCAGCTAGGCGAGGTCGATCTCCTCCGCCTCCACTCAAAAGAACTTCTCCTCCCCCAAGGAAGGCATCTCCTTTACGTGAATCACTTGTTCTTCATGTAGAAAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTTAGTAACTTCGGTGAGGTTGTAAGTGTGGAGTTGGCAATGGATCGAGCTGTTAATCTTCCTAAAGGATATGGATATGTGCATTTCAAGATAAGAGAGGATGCCGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAACATTGTTAAGGCAAGATTTACTCTACCCCCACGACAGAAAGTTTCACCACCCCCAAAGGCTTCTGCTATTGCTCCGAAGAGAGATGCTCCTAGGAGTGATAATGCTGGTGCAGATGCTGAAAAAGATGGGCCAAAGCGGCAAAGAGAACTATCTCCACGGAGAAAACCTCTCTCCCCGAGAAGGAGATCTCCTGTTCCTCGTAGAGCTGGATCTCCAAGAAGACCAGATTCTCCTCGCCGTCGTGCAGATTCTCCTGTCCGTCGTCGATTAGACTCTCCTCCCTATCGTCGTGGAGACACACCTCCTAGGAGGAGGCCCATATCTCCTGGAAGAGGTCGTTCTCCATCTCTGCCAAGGCGCCCTAGATCTCCCGGCAGAGTCTCACCTAGAAGGATGCGTGGTAGCCCCATTCGCAGACGTTCTCCTCCTCCATTAAGGCGCCGTTCACCACCTAGAAGAGCCCGTAGTCCTCCTAGAAGATCTCCAATTGGTCGTAGACGTAGTCGCTCTCCAGTACGTAGATCTGCACGCTCACGTTCTAGATCATTCTCACCTCGAAGGGGTCGACCACCGATGAGACGTGGGAGGTCTTCATCCTACTCTGATTCACCTAGTCCACGCAAGGTATCTCGGAGAACAAAGAGCCGCAGTCCAAGAAGGCCTTTGAGAGGAAGAGGCAGTAGCAACAGCAGCAGCAGCAGTTCACCACTCCCACCACCTCCACCTCCACCACCTCGCAAGCCATAG 1248 0.5152 MVKPGRGRRSPPSGSVSGSSSRSRSSSPSSRSRSSSRSRSRSFSSSSPSRSSRSPSRSPPPQRKKSPADAARRGRSPPPPLKRTSPPPRKASPLRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELAMDRAVNLPKGYGYVHFKIREDAEKALLYMDGAQIDGNIVKARFTLPPRQKVSPPPKASAIAPKRDAPRSDNAGADAEKDGPKRQRELSPRRKPLSPRRRSPVPRRAGSPRRPDSPRRRADSPVRRRLDSPPYRRGDTPPRRRPISPGRGRSPSLPRRPRSPGRVSPRRMRGSPIRRRSPPPLRRRSPPRRARSPPRRSPIGRRRSRSPVRRSARSRSRSFSPRRGRPPMRRGRSSSYSDSPSPRKVSRRTKSRSPRRPLRGRGSSNSSSSSSPLPPPPPPPPRKP 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0454 415 SUPERFAMILY RNA-binding domain, RBD 33 173 IPR035979 GO:0003676
Lal20g0454 415 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 168 IPR000504 GO:0003723
Lal20g0454 415 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 396 - -
Lal20g0454 415 MobiDBLite consensus disorder prediction 291 360 - -
Lal20g0454 415 PANTHER BNAA09G56240D PROTEIN 1 396 - -
Lal20g0454 415 MobiDBLite consensus disorder prediction 239 273 - -
Lal20g0454 415 MobiDBLite consensus disorder prediction 175 415 - -
Lal20g0454 415 MobiDBLite consensus disorder prediction 12 59 - -
Lal20g0454 415 CDD RRM_RNPS1 100 172 IPR034201 -
Lal20g0454 415 SMART rrm1_1 99 172 IPR000504 GO:0003723
Lal20g0454 415 MobiDBLite consensus disorder prediction 401 415 - -
Lal20g0454 415 MobiDBLite consensus disorder prediction 198 223 - -
Lal20g0454 415 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Lal20g0454 415 MobiDBLite consensus disorder prediction 1 96 - -
Lal20g0454 415 Gene3D - 15 182 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0454 Lal-Chr20 3668657 3674371 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0454 100 173 Eukaryotic Initiation Factors Gene Family AT2G23350 33.784 4.23e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0454 K14325 - gmx:100783566 281.182