Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0435 ATGTCCTGTTTTCCTTTCTTCAGCAAGGTGTCTTCTTCAGCAAGACAAGATCCAGACATTGATGAAGGCATTCAACATGTTAAACTCTATACCTACAATGAACTAACAAAAGCCACCAATGGTTTTAGTCAGGCTAATAAAATTGGAGAGGGTGGTTTTGGTTCTGTCTTTAAGGGACGGCTTAAAAATGGAAAATTTGCTGCTATAAAAGTTCTTTCAGCTGAATCAAGACAAGGGGAGAAGGAGTTCTTGACAGAGATCAATACCATTGCCGAAATACAGCATGAAAATTTGGTTAAGTTATACGGTTGTTGTGTGGAAAAAAATAACAGAATTTTAGTCTACAATTACCTTGAGAATAATAGCCTTGCTCAAACTCTTGTAGGTGGTGGTCACAGTAGTATCTACTTCGATTGGGAAACTCGATGTAGAATTTGCGTTGGCGTTGCACGTGGGCTTGCCTTTCTTCATGAAGAAGTAAGGCCTCTTATTGTTCATAGGGATATAAAAGCAAGCAATATTCTCCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGTCTTGCAAAGCTTATACCTTCAAACATGACTCATGTCAGCACACGCGTAGCAGGAACATTGGGTTATTTGGCACCGGAGTATGCAATAGGGGGTAGACTAACACGGAAAGCAGACATTTACAGTTTTGGTGTCCTCCTTCTGGAGATAGTCAGTGGAAGATGTAACACAAATTCGCAATTACCAATAGAAGAACAATTTCTTCTAGAAAGGGCATGGGATCTTTATGAGCGAAAAGAACTTGTAGGGCTGGTAGACACATCACTAAACGGAGAATTCGATGCCGAGCAGGCTTGTAAGTTTCTGAAGATTAGCCTTCTTTGCACTCAGGAATCTCCGAAGCTCCGGCCGTCGATGTCATCCGTGGTGAAGATGCTCACTGGAAAAATGAATGTTGATGATAGTAAGATAACAAAACCAGCATTAATTTCTGACTTTATGGACCTTAAAGTTAGAAAGAATCAAGAAAGTAGTAATATTGATACTACATACAATACATCATCTGCATCAGAAAACCAGGATAGTACCATGTCCTCGTCAGTTCCTTCAACTACTAGGACTTCAACTTTCACTGCACAATATGATCAAAGCCTATGA 1158 0.3981 MSCFPFFSKVSSSARQDPDIDEGIQHVKLYTYNELTKATNGFSQANKIGEGGFGSVFKGRLKNGKFAAIKVLSAESRQGEKEFLTEINTIAEIQHENLVKLYGCCVEKNNRILVYNYLENNSLAQTLVGGGHSSIYFDWETRCRICVGVARGLAFLHEEVRPLIVHRDIKASNILLDKDLTPKISDFGLAKLIPSNMTHVSTRVAGTLGYLAPEYAIGGRLTRKADIYSFGVLLLEIVSGRCNTNSQLPIEEQFLLERAWDLYERKELVGLVDTSLNGEFDAEQACKFLKISLLCTQESPKLRPSMSSVVKMLTGKMNVDDSKITKPALISDFMDLKVRKNQESSNIDTTYNTSSASENQDSTMSSSVPSTTRTSTFTAQYDQSL 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0435 385 Gene3D Phosphorylase Kinase; domain 1 12 117 - -
Lal20g0435 385 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 370 - -
Lal20g0435 385 ProSiteProfiles Protein kinase domain profile. 42 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0435 385 Gene3D Transferase(Phosphotransferase) domain 1 118 331 - -
Lal20g0435 385 SUPERFAMILY Protein kinase-like (PK-like) 21 314 IPR011009 -
Lal20g0435 385 Pfam Protein kinase domain 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0435 385 MobiDBLite consensus disorder prediction 344 385 - -
Lal20g0435 385 CDD STKc_IRAK 48 315 - -
Lal20g0435 385 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Lal20g0435 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Lal20g0435 385 PANTHER - 2 370 - -
Lal20g0435 385 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0435 Lal-Chr20 3529332 3533519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0435 30 367 Receptor kinase-like Gene Family AT1G53430 51.775 2.65e-109 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal20g0435 Pkinase 3.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0435 - - gmx:100782320 617.076