Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0404 ATGAGGAAGTTCCTGGTTATAGCATTTTCCATAACCATATGCTTCATTGCTTTTGTGGTATCAAAGATTATTATCTCAGTTCTACTCTACAAAAGGTGGAAAAAAAAGCGTGTGATTTATGAAGAAGAAGGGAAAATGGTAATATTTAGAACTTCAGTGTTGCAATCTCTCACATCTGAAGTAGTCTTAAAGAAGACACAGAAACTGAGCAACAAAGATATCATTGGTTCTGGTGGTTATGGCATAGTTTATGAACTAAAACTAGATGAGTCCATAGCCTTTGCTGTGAAAAGGTTGAACAGAGGAACTGCAGAAAGAGACAACGGTTTTGAGAGAGAGTTAGAAGCAATGGCAGACATAAAACACAGGAATATTGTGACCCTTCATGGATATTATACTGCACCACACTACAACCTTCTCATATATGAGTTAATGCCTAATGGAAGTTTGGATTCTTTTTTGCATGGGAAATCAAGGGAAAAGAAGCTTTTGGATTGGCCAACAAGATACAAAATAGCTATAGGTGCTGCTAGAGGAATAGCATATCTTCACCATGATTGCATCCCTCACATTATCCACAGAGATATCAAATCAAGTAATATATTGCTAGATGAAAATATGGAGGCTAGAGTTTCTGATTTTGGATTAGCCACATTGATGGAACCAAATAAAACTCATGTTTCAACAATTGTGGCTGGAACTTTTGGATACTTGGCACCTGAATATTTTGATACAGGGAGAGCAACATTCAAAGGAGATGTTTATAGCTTTGGAGTTGTGTTACTAGAGCTTTTAACAGGGAAAAAACCTAGTGATGAGGCATTTATGGAAGAAGGAACCAAGCTTGTAACATGGGTGAAGGCTGTGGTTGGAGAGAAGAAAGAAGAGTTAGTTCTGGATAATAGCTTAGGGTGTTGTCCAATGCAAGAGATCAACAAAGTGTTCAACATTGCAATGATGTGCCTTGAATCTGATCCCTTGAATAGGCCAACCATGGCAGAGATTGTCAACATGCTAGGCCAAACAGAACCACAGAAACTTGTCAAAACATCCTGA 1056 0.3807 MRKFLVIAFSITICFIAFVVSKIIISVLLYKRWKKKRVIYEEEGKMVIFRTSVLQSLTSEVVLKKTQKLSNKDIIGSGGYGIVYELKLDESIAFAVKRLNRGTAERDNGFERELEAMADIKHRNIVTLHGYYTAPHYNLLIYELMPNGSLDSFLHGKSREKKLLDWPTRYKIAIGAARGIAYLHHDCIPHIIHRDIKSSNILLDENMEARVSDFGLATLMEPNKTHVSTIVAGTFGYLAPEYFDTGRATFKGDVYSFGVVLLELLTGKKPSDEAFMEEGTKLVTWVKAVVGEKKEELVLDNSLGCCPMQEINKVFNIAMMCLESDPLNRPTMAEIVNMLGQTEPQKLVKTS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0404 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 191 203 IPR008271 GO:0004672|GO:0006468
Lal20g0404 351 ProSiteProfiles Protein kinase domain profile. 69 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0404 351 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Lal20g0404 351 SMART serkin_6 69 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0404 351 Gene3D Phosphorylase Kinase; domain 1 30 144 - -
Lal20g0404 351 PANTHER BNAA07G39120D PROTEIN 2 344 - -
Lal20g0404 351 SUPERFAMILY Protein kinase-like (PK-like) 51 339 IPR011009 -
Lal20g0404 351 Pfam Protein tyrosine and serine/threonine kinase 71 339 IPR001245 GO:0004672|GO:0006468
Lal20g0404 351 Gene3D Transferase(Phosphotransferase) domain 1 145 350 - -
Lal20g0404 351 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 2 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0404 Lal-Chr20 3251028 3254572 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0404 3 339 Receptor kinase-like Gene Family AT2G35620 45.588 7.17e-98 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIa Lal20g0404 PK_Tyr_Ser-Thr 2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0404 - - ahf:112703495 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0404 20 3251028 3254572 Lal20g0404 20 3251028 3254572 ECH