Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0395 ATGACCATGAACATCAGAATCACTTCCTCTCACTTTTTCTTCCTTTCACTACTTCCCATTTGCTTCTCATTCCTTGCTTTTGGAGCCACTACTTTACCACAAGATGAAGTGGAAGCTCTTAAAGATATAGCTAAAACACTTGGTAAGAAGGATTGGAACTTTAGTATAGATCCATGCAGCTGGGATAGGACAATGGATAATAATGTTGTCCTTTGTAATTGCTCAATGTCCAATTACATCCTCTGCCATGTTGTTAAAATAGTTCTGAAATCACAAAGTCTTCAAGGCACTCTCCCACCAGAACTGATCAGGTTGCCTTATCTCCAAGAAATTGACCTTACCAGAAATTACCTTAGTGGTACAATTCCTAGAGAATGGGGCTCCATGAATCTTCAGCATATCTCACTTCTTGGAAATAGACTAAGTGGTCCAATCCCAGTAGAGTTAGCAAACATCACCACTCTCAAACGATTGGTTCTTGAGTTCAATCAATTCAATGGCACGCTTCCTCCAGAACTTGGGAATCTTGCCCACATTGAAATGCTGCATCTAAGCTCCAACAACTTTACTGGAGAGTTGCCTACGACTTATGCGACACTGACTTCATTAACAGAATTCCGAATCAGTGACAATCAATTCTCAGGAACCATACCTGATTTTATTCAAAGATGGACAAATCTTAAGATACTAGCAATTCAAGGTAGTGGTTTAAGCGGACCAATTCATTCTGGAATTTCATTTCCGCAAAACATTACTGATTTGAGAATTAGTGACTTGAGTGGAAATGATTCTACATTTCCACAAGTTGGTAATCTGAAAGGATTGAAGACATTGATATTAAGGAGCTGCAATATTAATGACACACTTCCTCAAAATCTTGTAAACCTGACTGATATGCAAGTCCTGGACCTCAGTTTTAACAAATTAAGTGGAGAAGTTCCAGGAAACCATGAAGGATTAACGGGAGCAACCTACATGTATTTGACAGGAAACTTTCTCACTGGACTAGTGCCCAAGTGGACAGTGAACTCTAATAAATACTTAGATCTTTCATATAACAACTTCAGCATCGAAAACCCAGAGCCGCAGACATGTCATGCGCAAAATGTGAACATGTTTTCAAGCTTTTCAAGGAACAACTCACCTGTTTCTTGTGAAAGCAGCACTAGAATCTGTCCTACAACCTTTAACTCTCTCCATATAAATTGTGGTGGAAAGAAGACTATCATTCGAGGAATAACATACGAAGAAGATACAGATTCAGCTGTGCCAGCAGTATATAGACAGAGTAGAGGCAACTGGGCTTATAGCAACACTGGTCACTTTTTGGATAATAGTACAGCATCTGCACGAGGACAGTTTCTCCCTTATACCTCAGAGAATGAAACTAGGCTTCATATGACTGATATGGAACTATATAGGAATGCACGTATTTCCCCCATTTCTCTTACTTATTATGGATTTTGCATGGAAAATGGAGATTACACAGTAAAGCTCCACTTTGCAGAGATAATGTTCACTGACGATAACACATTTAGGAGCCTAGGGAGACGTGTATTTGACGTCTATATTCAGGGAGAGCGGGTACTGAAGGATTTCAACATTGAAAATGAAGCACAAGGAGTTGGCAAGGAAGTTATAAAACAGTTTCCGGCTCATGTGACTAGTAATGACTTAGAGATCCGCTTATATTGGGCTGGCAAGGGGACTACTGCTGTCCCATATAAATCAGTATATGGTCCTCTAATATCAGCTATATCTATCAAGCATGACACTCCGCGTAGCATATCTATATGGGCTGTGGTCGCAATTGTGGCTGCAACAGTGACTATTGTCATCCTGATTTCTGGTATACTTTGGTGGAGAGGTTGTCTTGGAAAGAAGCATTCATTAGATACAGAGCTGAGGGATTTAGATCTTCGAACTGGTTTATTTACTTTAAGTCAAATCAAAGCAGCAACAAATAATTTTGATATTTGCAACAAGATTGGAGAAGGAGGGTTTGGAGCTGTTTATAAGGGCATTATGTCAAATGGCATGGCAATAGCTGTGAAACAGCTTTCGCCCAAATCAGAACAAGGAAAACGTGAGTTCGTAAATGAGATAGGCGTTATCTCAGCTTTGCAACACCCTTGTCTTGCTAAACTTTATGGCTGTTGTGTTGAGGGAGATCAGTTATTGCTGGTATATGAATATATGGAAAATAATAGCCTTGCACAGGCTTTATGGGGCCCAGAAGAATTTCGTTCAAAGTTGAGTTGGCCGACAAGGCAGAAGATCTGTGTTGGTATTGCTAGAGGTTTGGCTTTCCTGCATGAAGAATCGAGACTGAAAATTGTTCATAGGGACATTAAGGCCACTAATGTGTTGCTTGACAAAAATATGAACCCAAAGATATCTGATTTTGGTTTGGCCAAGCTCGATGAGGGGGAAAACAGCCACATAAGTACTAGAATAGCTGGGACCTGCGGATATATGGCTCCTGAATATGCAATGCATGGTTATTTAACTGATAAAGCAGATGTGTATAGTTTTGGAGTTGTTGCCTTCGAAATTGTTAGTGGAAAGAGAAACACTATTCACCGGTCAATGGAAGAAATATTCTATCTTGTTGATTGGGCACTTCTGTTGAAAGAGAAAGGTAAACTCATGGAGCTAGTTGATCAAAGATTGGGTTCAGATTTCAATGAAGAGGAGGCGGTGGTGATGATCGAAGTAGCTTTACTATGCACTAATATGACTTCAAGCCTTAGGCCTACCATGTCTTCTGTGCTAAGCATGCTTGAAGGAAGAACTATGGTTCCAGAATTAGTCTCATATCCAAGTAAGATAATGAATGAGATGGAGGCAATGAGACAGTTTTACAATCTGATTGAAGAAAATGAAAAAACGTGA 2895 0.3979 MTMNIRITSSHFFFLSLLPICFSFLAFGATTLPQDEVEALKDIAKTLGKKDWNFSIDPCSWDRTMDNNVVLCNCSMSNYILCHVVKIVLKSQSLQGTLPPELIRLPYLQEIDLTRNYLSGTIPREWGSMNLQHISLLGNRLSGPIPVELANITTLKRLVLEFNQFNGTLPPELGNLAHIEMLHLSSNNFTGELPTTYATLTSLTEFRISDNQFSGTIPDFIQRWTNLKILAIQGSGLSGPIHSGISFPQNITDLRISDLSGNDSTFPQVGNLKGLKTLILRSCNINDTLPQNLVNLTDMQVLDLSFNKLSGEVPGNHEGLTGATYMYLTGNFLTGLVPKWTVNSNKYLDLSYNNFSIENPEPQTCHAQNVNMFSSFSRNNSPVSCESSTRICPTTFNSLHINCGGKKTIIRGITYEEDTDSAVPAVYRQSRGNWAYSNTGHFLDNSTASARGQFLPYTSENETRLHMTDMELYRNARISPISLTYYGFCMENGDYTVKLHFAEIMFTDDNTFRSLGRRVFDVYIQGERVLKDFNIENEAQGVGKEVIKQFPAHVTSNDLEIRLYWAGKGTTAVPYKSVYGPLISAISIKHDTPRSISIWAVVAIVAATVTIVILISGILWWRGCLGKKHSLDTELRDLDLRTGLFTLSQIKAATNNFDICNKIGEGGFGAVYKGIMSNGMAIAVKQLSPKSEQGKREFVNEIGVISALQHPCLAKLYGCCVEGDQLLLVYEYMENNSLAQALWGPEEFRSKLSWPTRQKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKNMNPKISDFGLAKLDEGENSHISTRIAGTCGYMAPEYAMHGYLTDKADVYSFGVVAFEIVSGKRNTIHRSMEEIFYLVDWALLLKEKGKLMELVDQRLGSDFNEEEAVVMIEVALLCTNMTSSLRPTMSSVLSMLEGRTMVPELVSYPSKIMNEMEAMRQFYNLIEENEKT 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0395 964 ProSiteProfiles Protein kinase domain profile. 657 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0395 964 Gene3D Ribonuclease Inhibitor 35 195 IPR032675 -
Lal20g0395 964 Gene3D Ribonuclease Inhibitor 196 265 IPR032675 -
Lal20g0395 964 Gene3D Transferase(Phosphotransferase) domain 1 733 937 - -
Lal20g0395 964 SUPERFAMILY L domain-like 72 398 - -
Lal20g0395 964 Gene3D Ribonuclease Inhibitor 266 393 IPR032675 -
Lal20g0395 964 ProSitePatterns Protein kinases ATP-binding region signature. 663 685 IPR017441 GO:0005524
Lal20g0395 964 Gene3D - 397 592 - -
Lal20g0395 964 SMART serkin_6 657 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0395 964 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 71 948 - -
Lal20g0395 964 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 71 948 - -
Lal20g0395 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 779 791 IPR008271 GO:0004672|GO:0006468
Lal20g0395 964 Pfam Malectin domain 398 586 IPR021720 -
Lal20g0395 964 Pfam Protein tyrosine and serine/threonine kinase 659 927 IPR001245 GO:0004672|GO:0006468
Lal20g0395 964 Gene3D Phosphorylase Kinase; domain 1 626 732 - -
Lal20g0395 964 SUPERFAMILY Protein kinase-like (PK-like) 641 949 IPR011009 -
Lal20g0395 964 CDD STKc_IRAK 663 930 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0395 Lal-Chr20 3164970 3174898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0395 29 958 Receptor kinase-like Gene Family AT1G53420 53.773 0.0 988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal20g0395 PK_Tyr_Ser-Thr 8.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0395 - - gmx:100791136 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0395 20 3164970 3174898 Lal20g0395 20 3164970 3174898 ECH
Lal20g0395 20 3164970 3174898 Lal1g1606 1 18445791 18447412 LSH