Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0394 ATGCATATTCCAGGATATCTATTTGAGAGGAAGGTCAAATGTGATTGCACTTACCATAATCACACTGTTTGCCATGTTACAAACATTGTTCTCAGGGGTCTCAATATATCTGGAATTATACCCAATACATTTGGAAGTCTCAATCATCTAACAGAACTTGATCTCACACGCAATCATTTCACTGGCTCAATTCCGAAGAGTCTTGGACGCCTCTCGCTCGCCACTCTGTCACTTTTGGGAAATCGACTTAGCGGTCCAATTCCCTCAGAAATTGGTCTTATTGCAAGTCTTGAGAACCTGATCTTAGAGGATAATCAACTTAATGGAACTCTTCCTCCTAGCCTTGGAAATTTGAGTAAACTGCTTCGCTTACATCTTTCTGGAAATAATTTTACAGGGACAATACCAGAAGAATTTAGCAAACTAACGACTCTCACTGACTTTAGGATAGATGGGAGCAATTTATCTGGGAAGATACCTAGTTTTATTGGGAATTGGACCCATCTTGTGAGATTGGATTTGCAAGGCACATCCATGGTAGGCCCAATTCCTGACACTATATCTGGCTTGACAAATTTACAAGATTTGAGAATAAGTGATTTGAAGGCTGGTCCAACAACATTTCCTGATCTGAAGGAATTGAAAATTTTGACTAGACTGGAATTGAGAAATTGCTTAATCACTGGTCCCATTCCTGACTACCTTGGAGAACTGTCAGCTCTAAAAGTTTTAGACCTGAGCTCCAACAGGTTGTCGGGTTCAATCCCAGATTCACTTCAGGACTTGAAAATATTAAGTTACATGTTTTTGACTAACAATACTCTGACTGGACCAGTTCCTGGATGGTTACTGGAGTCCAAACATAATATTGATTTATCTTACAACAATTTTACTGAGCCTTCTGTAAGTAGTTGCCAACAAGTGGACGTGAACTTAGCTTCCAGCCACTCTCCCTCAGTAAGCACTTCACTTTCCTGTTTGAAGATGGGCCTACCATGTTCTGGAACACCCATTGATCATTCACTGTTCATAAACTGTGGAGGTCCTGAAATTAATGTTGGGGAAAATGTATATGATGCTGATGTTGATCACCGTGGCACTTCAACTTTTTTTCTTAGCAATACTGGCCAGTGGGCTTATAGCAGCACAGGATTATTTGTAGGAAATGCTGCTGCTGATTATGTAACATCAAATAAGAATTCTTTGAATATTCAAGGCCCTCAATACTACCAAACAGCCCGACTTGCCCCTCTGTCTCTTAGTTACTTTGGCCTATGTATGCTAAAGGGCAATTATAAAGTGAGACTCCATTTTGCTGAGATAATGTTTACTAGTGACCAGAACCAGACATTTAGCAGCGTTGGAAGGCGCATATTTGATGTTTCGGTTCAAGGTGTTAAATATTTGGAAAATTTTAACATTGCGGAAAAAGCTGGTGGAGTTGGTTTGGGGATCACTGAGGAGTTTAATGTTGATGTAAACGACAGCACTTTGGAAATTCGCTTATCCTGGGCAGGAAAAGGCACTAATGCCATTCCTGTAAGAGGTGTTTATGGACCTCTTATATCTGCTATCACTGTGACCCCAAACTTTGAAATCCCACCAGATGGCCTGTCTACTGGAGCAATTGTTGGAATTGTGGGTGCATCATGCGTGTTTGTCATATTGGTACTTTTTGTCCTTTTGAAAATGGGTTACATTTGCAGGAAAAATCTAATAGACACAGAACTTCTAGATCTGAAAACGGGGTATTTCAGTTTAAAACAAATCAAAACTGCTACTAATAATTTTGACCCAGACAATAAGATAGGCGAAGGAGGCTTTGGGCCAGTATACAAGGGTATATTATTAGATGGTACTGTAATTGCTGTTAAGCAGCTCTCCTCCAAATCAAGGCAAGGAAACCGCGAATTTGTTACTGAAATAGGCATGATATCGGCTTTGCTGCATCCAAATCTTGTGAAGCTTTATGGGTGCTGCATTGAAGGAAACCAGCTGCTTCTAGTGTATGAATACTTGGAAAACAATAGTCTTGCTCGTGCACTTTTTGGTAAAGAAGAACAAAGGCTGCACTTGGAGTGGCCCGCGAGAATGAAGATATGTCTGGGGATAGCAAAGGGACTAGCTTATCTTCATGAGGAATCAAGGTTGAAAATAGTACACAGAGATATTAAGGCAACCAATATCTTGCTTGATAGGGCTCTTAATGCTAAGATCTCTGACTTTGGTTTAGCTAAGCTTGATGAAGACGAGAACACTCATATCAGCACAAGAATAGCTGGAACAATTGGTTACATGGCTCCTGAGTATGCTATGAGGGGTTACTTGACTGATAAAGCAGATGTTTATAGCTTTGGAGTTGTAGCATTAGAGATTGTTAGTGGAAGGAGCAACACAAGTTACAGGTCAAAGGAGGAGTTTGTTTATCTTCTGGATTGGGCATGTGTTCTACAAGAGCAAGAAAACCTTCTGGAGTTGGTGGATTCAGATCTTGGCACAGATTACTCCCAAGAAGAGGCCATGAGAATGCTTCAATTGGCACTCATATGCACAAATCCATCTCCAACTCTTAGACCTGTCATGTCATCTGTAGTGAGCATGCTTGAAGGAATCACTCCAATTGAAGTACCAAAAATCAAAAGGGTTGAGGTTTCTCAAGATGGAAGATTCAAATCCCTCGAGACGCTGCAACAAGACAACCAAGATCATGCTTCTTCTGCATTCTCGTACGATAGTATGGAGCGAAGAAGCCTATCGAATGGACCATGGATTGATTTCTCCACATCTTTATCTGCCCGGTATAGATGA 2808 0.4074 MHIPGYLFERKVKCDCTYHNHTVCHVTNIVLRGLNISGIIPNTFGSLNHLTELDLTRNHFTGSIPKSLGRLSLATLSLLGNRLSGPIPSEIGLIASLENLILEDNQLNGTLPPSLGNLSKLLRLHLSGNNFTGTIPEEFSKLTTLTDFRIDGSNLSGKIPSFIGNWTHLVRLDLQGTSMVGPIPDTISGLTNLQDLRISDLKAGPTTFPDLKELKILTRLELRNCLITGPIPDYLGELSALKVLDLSSNRLSGSIPDSLQDLKILSYMFLTNNTLTGPVPGWLLESKHNIDLSYNNFTEPSVSSCQQVDVNLASSHSPSVSTSLSCLKMGLPCSGTPIDHSLFINCGGPEINVGENVYDADVDHRGTSTFFLSNTGQWAYSSTGLFVGNAAADYVTSNKNSLNIQGPQYYQTARLAPLSLSYFGLCMLKGNYKVRLHFAEIMFTSDQNQTFSSVGRRIFDVSVQGVKYLENFNIAEKAGGVGLGITEEFNVDVNDSTLEIRLSWAGKGTNAIPVRGVYGPLISAITVTPNFEIPPDGLSTGAIVGIVGASCVFVILVLFVLLKMGYICRKNLIDTELLDLKTGYFSLKQIKTATNNFDPDNKIGEGGFGPVYKGILLDGTVIAVKQLSSKSRQGNREFVTEIGMISALLHPNLVKLYGCCIEGNQLLLVYEYLENNSLARALFGKEEQRLHLEWPARMKICLGIAKGLAYLHEESRLKIVHRDIKATNILLDRALNAKISDFGLAKLDEDENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVALEIVSGRSNTSYRSKEEFVYLLDWACVLQEQENLLELVDSDLGTDYSQEEAMRMLQLALICTNPSPTLRPVMSSVVSMLEGITPIEVPKIKRVEVSQDGRFKSLETLQQDNQDHASSAFSYDSMERRSLSNGPWIDFSTSLSARYR 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0394 935 CDD STKc_IRAK 603 871 - -
Lal20g0394 935 SMART LRR_typ_2 118 141 IPR003591 -
Lal20g0394 935 SMART LRR_typ_2 238 261 IPR003591 -
Lal20g0394 935 SMART LRR_typ_2 47 71 IPR003591 -
Lal20g0394 935 Gene3D Transferase(Phosphotransferase) domain 1 673 887 - -
Lal20g0394 935 Gene3D Phosphorylase Kinase; domain 1 565 672 - -
Lal20g0394 935 SMART serkin_6 597 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0394 935 SUPERFAMILY Protein kinase-like (PK-like) 582 882 IPR011009 -
Lal20g0394 935 ProSitePatterns Serine/Threonine protein kinases active-site signature. 719 731 IPR008271 GO:0004672|GO:0006468
Lal20g0394 935 ProSiteProfiles Leucine-rich repeat profile. 240 263 IPR001611 GO:0005515
Lal20g0394 935 SUPERFAMILY L domain-like 20 299 - -
Lal20g0394 935 PANTHER - 20 926 - -
Lal20g0394 935 Gene3D - 340 530 - -
Lal20g0394 935 Pfam Malectin domain 342 525 IPR021720 -
Lal20g0394 935 Gene3D Ribonuclease Inhibitor 138 201 IPR032675 -
Lal20g0394 935 Pfam Leucine rich repeat 25 83 IPR001611 GO:0005515
Lal20g0394 935 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Lal20g0394 935 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 926 - -
Lal20g0394 935 ProSiteProfiles Protein kinase domain profile. 597 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0394 935 Pfam Protein tyrosine and serine/threonine kinase 600 867 IPR001245 GO:0004672|GO:0006468
Lal20g0394 935 Gene3D Ribonuclease Inhibitor 8 137 IPR032675 -
Lal20g0394 935 Gene3D Ribonuclease Inhibitor 202 314 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0394 Lal-Chr20 3138989 3146187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0394 12 929 Receptor kinase-like Gene Family AT1G53440 62.513 0.0 1151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal20g0394 PK_Tyr_Ser-Thr 2.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0394 - - adu:107459475 1331.62