Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0379 ATGAAGAGGAATAGTTTGAGCACCAACTATGCCAATAACTACCACAACAACAAGAACCAAATGGCAATGAAAGAGTTTTTGGACTGCAATAACAACTCTCATAATGGAGAGGATATTGATCACTACATGAATGGTTTCCCATGGCCTCCAAGGTCATACACTTGTAGCTTCTGCATGAAGGAATTCAAGTCTGCTCAAGCACTTGGTGGCCATATGAATGTGCATAGAAGGGATAGAGCAAGGTTGAGGCATTCATCACCTCCAACTAGTGATCATAATCATGGTCATGGTCAAGGCCACCCTATGATAAACCTTAACCCTAACACAAACCCTAGTTTCTCATCACCAACCTCATCTAACTTACCCTTGTTACCACCATCATGGTCTTCTCATCAGTCTTCATCAAGTCACAGATCACCTGCAACTTCCACATTACCCTTGTTTGTTTCTCCCACAACTCCCTCTTATTCTTACTCTTCTCCATCTACTTCTTCACCTTCTGAGTTGAAGAGATGGGTTGTGGTGGATGGTATCTTATTGAAGAACCCTTTGAGAACAAAGACCACAGAGCCAACAAAACCAATGATTATTGAAGAAGATGGGTGTAAAATGTTGAAGAAGGGTGAGATTCTTAGGATGGATTTGGAGATAGGTATGCCTAGAGAATATGATTTGGATCTGGAGCTTCGTTTGGGTAATTACTCTTAG 708 0.4138 MKRNSLSTNYANNYHNNKNQMAMKEFLDCNNNSHNGEDIDHYMNGFPWPPRSYTCSFCMKEFKSAQALGGHMNVHRRDRARLRHSSPPTSDHNHGHGQGHPMINLNPNTNPSFSSPTSSNLPLLPPSWSSHQSSSSHRSPATSTLPLFVSPTTPSYSYSSPSTSSPSELKRWVVVDGILLKNPLRTKTTEPTKPMIIEEDGCKMLKKGEILRMDLEIGMPREYDLDLELRLGNYS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0379 235 MobiDBLite consensus disorder prediction 82 146 - -
Lal20g0379 235 MobiDBLite consensus disorder prediction 102 146 - -
Lal20g0379 235 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Lal20g0379 235 Pfam C2H2-type zinc finger 53 77 - -
Lal20g0379 235 SMART c2h2final6 53 75 IPR013087 -
Lal20g0379 235 Gene3D Classic Zinc Finger 49 96 - -
Lal20g0379 235 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 2 233 - -
Lal20g0379 235 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Lal20g0379 235 PANTHER OS07G0101800 PROTEIN 2 233 - -
Lal20g0379 235 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0379 Lal-Chr20 3031166 3031873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0379 40 232 C2H2 Transcription Factor Family AT3G23130 41.837 2.64e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal20g0379 zf-C2H2_6 2.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0379 - - var:108333719 201.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0379 20 3031166 3031873 Lal11g1469 11 17969116 17969847 LSH