Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0377 ATGTCTCTAAGGAAGGTCTTCCGCTCTCGCAAATTCTCCAGATCTTTCAACCTAACCACCTCCATTGACCCCTCACTCGCGGCCGAACGTAGCTCCGGCGAAGACTCGCCACATTGCAATGCGTGGTCGAATATGTTGCCAGAGCTTCTCGGCGAGATTATACGGCGCGTGGAAGTCACCGAGGAGCAATGGCCGCGCCGCCAAAACGTCGTAGCGTGCGCCTGTGTTTGTAAGCGTTGGAGAGACATCACGCGCCAGATCGTGCGTTCCCATTCTCATAAGGGCACAATCACCTTCCCCTCTTGCCTTAAACAGCCGGGACCACGTGACCTTCCCCACCAATGCCTTATAAAGCGGAACAAGAAAACGTCAACGTTTTACCTCTACCTTGCCCTTACACCATCTAGGAGATATAGGCGTGGTACCCATACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGGAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACGATTTATGACAGCAAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGACTAGCCGTCGTTTTACCAGCAAGCAGATAAGCCCTGAAGTTCCTGCAGGCAATTTCGATGTGGGGCAGGTCTTCTACAAGTTCAACCTTTTGAAATCAAGAGGGCCAAGGAGGATGGTCTGCCAACTAAAGTGTCCCGTCTCATCATCATCGTCCGGAGAAAATTCAAATAGCATATCTCCAGATGGCCATAAGATGTATAGTAGAGAACATGGCTACTCGATCTTGAAGAACAAAGCTCCAAGATGGCATGAGAATTTACAGTGCTGGTGCTTGAATTTCCATGGTCGCGTAACCGTTGCATCGGTGAAGAACTTTCAGCTTGTTGCTACTGTGGACCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAATGGTGCTCCTCCAGTTTGGGAAAGTAGGGGATGATACTTTCACCATGGATTATAGGAAGCCTTTATCTGCCTTTCAGGCATTTGCCATTTGCTTGAGTAGCTTTGGCACTAAACTGGCATGTGAGTAA 1080 0.487 MSLRKVFRSRKFSRSFNLTTSIDPSLAAERSSGEDSPHCNAWSNMLPELLGEIIRRVEVTEEQWPRRQNVVACACVCKRWRDITRQIVRSHSHKGTITFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTPSRRYRRGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSKPPHSGAKPSSGRTSRRFTSKQISPEVPAGNFDVGQVFYKFNLLKSRGPRRMVCQLKCPVSSSSSGENSNSISPDGHKMYSREHGYSILKNKAPRWHENLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEEMVLLQFGKVGDDTFTMDYRKPLSAFQAFAICLSSFGTKLACE 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0377 359 MobiDBLite consensus disorder prediction 187 202 - -
Lal20g0377 359 ProSitePatterns Tub family signature 1. 287 300 IPR018066 -
Lal20g0377 359 SUPERFAMILY F-box domain 34 86 IPR036047 GO:0005515
Lal20g0377 359 MobiDBLite consensus disorder prediction 181 202 - -
Lal20g0377 359 Pfam F-box domain 42 88 IPR001810 GO:0005515
Lal20g0377 359 PANTHER TUBBY-RELATED 30 359 - -
Lal20g0377 359 PRINTS Tubby superfamily signature 146 162 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 162 186 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 211 238 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 269 286 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 287 303 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 316 335 IPR000007 -
Lal20g0377 359 PRINTS Tubby superfamily signature 337 359 IPR000007 -
Lal20g0377 359 Pfam Tub family 103 354 IPR000007 -
Lal20g0377 359 ProSitePatterns Tub family signature 2. 344 359 IPR018066 -
Lal20g0377 359 Gene3D Tubby Protein; Chain A 97 359 IPR025659 -
Lal20g0377 359 SUPERFAMILY Tubby C-terminal domain-like 93 359 IPR025659 -
Lal20g0377 359 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 30 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0377 Lal-Chr20 3017808 3022012 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0377 1 359 TUB Transcription Factor Family AT1G53320 67.632 1.34e-179 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal20g0377 Tub 1.1e-92 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0377 K19600 - gmx:100801919 573.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0377 20 3017808 3022012 Lal20g0377 20 3017808 3022012 ECH
Lal20g0377 20 3017808 3022012 Lal1g1617 1 18584878 18588952 LSH