Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0369 ATGAACTGTTTGTCTTTTCTTTTCTGCAAAAAGGGGTCTTCCTCAGCCACACAATCATCAGAAGTTGATATAGTTGCAACAGATATTTCAGACATTGAGAATGTCAATCGTTACACTTACAAGGAATTGCAAATTGCGACCGAAGGATTTAGTCCAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTGAGAAATGGTACTCTGGCTGCTATAAAGGTTTTGTCGGCTGAATCAAGACAAGGCGTCCGGGAGTTCTTGACAGAAATAAAAGTGATCAGTAGTATAGAGCATGAGAATCTAGTTAAATTGTATGGATGCTGTGTGGAAGAAAACCATAGGATTTTGGTATATGAATATCATGAAAATAACAGCCTAGCACAAACACTTCTTGGTGGAGGTCATAGTAGCATCCAATTCAGTTGGCATGTACGGCGGAACATTTGCATTGGTGTCGCCCGAGGCCTAGCGTTCCTTCACGACGTAGTTCAGCCACATATTATTCATAGAGACATTAAAGCAAGCAACATATTACTTGATAAAAGCCTCCAGCCTAAAATTTCAGATTTTGGACTCGCAAAGCTTATTCCAGCAAACTTGACACATATTAGTACACTTGTTGCTGGTACAGCCGGCTATCTAGCTCCTGAATATGCGATTCGAAGTCAAGTAACAAGAAAATCCGATGTCTATAGCTTTGGAGTTCTACTACTAGAAATTGTTAGTGGGAAGTGTAACACAAACAGACGTTTACCTGTGGCAGAACGATATCTTCTTGCAAAGGCATGGGATTTGTATGAGAGGGGGGAGATGGAGAGTTTGGTGGATGTCTTTCTTGATGGAGAATTCAATGTTGAGGAGGCAATAAGGTTTTGTAAGATTGGCCTTCTTTGCACTCAGGACTCTCTTCAGCTCCGACCTTCGATGTCTAAGGTGCTTCACATGCTGATAGGTGAAACAGATGTGAATGAGGAGAAGATGGCAAAACCCGGCTTGATATTTGAAATTGTAGAAGGCAAAGAGCGAGGGAAACAGAAAGGGAAGGCGGACGTAGAAAATGCATCTTCTTCTTTGGTTGGTTCAGGGAGACAAGATGATTCATCTTTATCAGGAATTGCGAGCTCTTTCGCTACCATGACCTTCACTTCGATTTATGACCGAAGCAATTAA 1185 0.4177 MNCLSFLFCKKGSSSATQSSEVDIVATDISDIENVNRYTYKELQIATEGFSPANKIGEGGFGSVYKGKLRNGTLAAIKVLSAESRQGVREFLTEIKVISSIEHENLVKLYGCCVEENHRILVYEYHENNSLAQTLLGGGHSSIQFSWHVRRNICIGVARGLAFLHDVVQPHIIHRDIKASNILLDKSLQPKISDFGLAKLIPANLTHISTLVAGTAGYLAPEYAIRSQVTRKSDVYSFGVLLLEIVSGKCNTNRRLPVAERYLLAKAWDLYERGEMESLVDVFLDGEFNVEEAIRFCKIGLLCTQDSLQLRPSMSKVLHMLIGETDVNEEKMAKPGLIFEIVEGKERGKQKGKADVENASSSLVGSGRQDDSSLSGIASSFATMTFTSIYDRSN 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0369 394 SMART serkin_6 50 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0369 394 Pfam Protein kinase domain 53 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0369 394 CDD STKc_IRAK 56 321 - -
Lal20g0369 394 SUPERFAMILY Protein kinase-like (PK-like) 33 321 IPR011009 -
Lal20g0369 394 MobiDBLite consensus disorder prediction 350 373 - -
Lal20g0369 394 ProSiteProfiles Protein kinase domain profile. 50 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0369 394 ProSitePatterns Serine/Threonine protein kinases active-site signature. 172 184 IPR008271 GO:0004672|GO:0006468
Lal20g0369 394 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 380 - -
Lal20g0369 394 Gene3D Phosphorylase Kinase; domain 1 21 125 - -
Lal20g0369 394 MobiDBLite consensus disorder prediction 355 373 - -
Lal20g0369 394 Gene3D Transferase(Phosphotransferase) domain 1 127 335 - -
Lal20g0369 394 PANTHER RECEPTOR-LIKE KINASE 3 380 - -
Lal20g0369 394 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0369 Lal-Chr20 2958594 2962340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0369 38 338 Receptor kinase-like Gene Family AT1G56120 54.817 8.35e-104 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal20g0369 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0369 - - gmx:100797257 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0369 20 2958594 2962340 Lal20g0369 20 2958594 2962340 ECH