Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0365 ATGATTATTAGCAATGGAGTTTGCACTTTTCGCACCTGCCTCCGTCTCCCGGAGATACCCCTTCTCCGACCATCACCGCCGCCGTTATCCTTCTCTAATCTCCGGCGCCGGTTTTTAGCCACTTCCGTTAACGCTGCAACGAGGAATAAGGAGAAAGTGATTGTAATTTCTGGTCCCACAGGTTCTGGTAAGAGCCGGCTTGCATTGGAGCTTGCCAAGCGTCTCAACGGAGAAATCGTTAGTGCAGATTCTGTTCAGGTATATCGGGGTCTTGATATTGGATCTGCAAAGCCTTCCCCAACTGAAAGAAAGGAGGTACCTCATCATCTGATTGACATACTACACCCATCTGAAGGCGTGTTTCCTAGCGTCCATTTTTTTATTACCCCCATAAAAACTGATTATTATTTATCAGACTATTCTGTTGGACAGTTTTTTGAGGATGCGAGGCAAGCTACTAGATGTATTCTTGACAATGGCCGTGTTCCTATAGTGGTTGGAGGTACTGGATTGTATTTAAGATGGTTCATATATGGAAAACCAGATGTGCCTAAAGCCTCTCCGGAGGTCACATCAGAAGTATATCTGGAGTTAGCTGAACTACAGAGAAATGAAGACTGGGATGCAGCTGTGCAGTTGGTTGTAAAAGCAGGTGATCCGAAGGCTCAATTTTTAAAATTGAATGATTGGTATCGATTGCGGCGTAGCCTAGAGGTTATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAAAAGGGTGATTGTAGTGATGCTGATGTTTCTGAGTCATCTGAGGTGAACACCTATGGTGATGCCATGGAGGAAACCAACTCGGCAGACTTAGATTACGAGTTTATGTGTTTTTTCCTTTCTAACCAAAGAGTTGACCTCTATCGAGCAATTGATTATCGGTGTGAAGATATGCTAATGGGAAGGGATGGGATTCTATCCGAGGCTCAATGGCTTCTTAATATTGGTCTTCTTCCAAATTGCAATTCTGCTACACGAGCAATTGGTTACAGACAAGGCATGGAGTACTTACTAAGATGCAGAGAGCAAGGGGGTCAGAGTTCAGTTGGGGAATTTCATAAATTCTTATCTGAATTTCGTAAAGCATCACGGAATTTTGCAAAAAGACAGTTGACATGGTTTCGCAATGAAAGTATATACCACTGGCTTGATGCTTCTAAACCTCTGGAAACAGTTTTAAACTTCATTCATGATGCATACCGTGATCAGAGTGGAAGTATTGCTGTGCCTGAAAACCTAAGAATGGCTAGAGATATTTCTAATGGCCGAGAAGCTTCTTTGCTCAAGTCTTACCGCACCCAAAATAGGCATTTTGTGAATCGAGATGATTGTTCTCCTATACTGGACTGGATAAGCGAGAGTCAAAAGTTGAAGGCATAG 1434 0.431 MIISNGVCTFRTCLRLPEIPLLRPSPPPLSFSNLRRRFLATSVNAATRNKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDIGSAKPSPTERKEVPHHLIDILHPSEGVFPSVHFFITPIKTDYYLSDYSVGQFFEDARQATRCILDNGRVPIVVGGTGLYLRWFIYGKPDVPKASPEVTSEVYLELAELQRNEDWDAAVQLVVKAGDPKAQFLKLNDWYRLRRSLEVIKSSGSPPSAFRVPYDSFREKGDCSDADVSESSEVNTYGDAMEETNSADLDYEFMCFFLSNQRVDLYRAIDYRCEDMLMGRDGILSEAQWLLNIGLLPNCNSATRAIGYRQGMEYLLRCREQGGQSSVGEFHKFLSEFRKASRNFAKRQLTWFRNESIYHWLDASKPLETVLNFIHDAYRDQSGSIAVPENLRMARDISNGREASLLKSYRTQNRHFVNRDDCSPILDWISESQKLKA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0365 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 43 472 IPR039657 -
Lal20g0365 477 Pfam IPP transferase 86 395 - -
Lal20g0365 477 Gene3D - 50 459 IPR027417 -
Lal20g0365 477 Hamap tRNA dimethylallyltransferase [miaA]. 53 412 IPR018022 GO:0008033
Lal20g0365 477 Gene3D - 182 252 - -
Lal20g0365 477 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 9 43 472 - -
Lal20g0365 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 50 332 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0365 Lal-Chr20 2935400 2946840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0365 56 177 C2H2 Transcription Factor Family AT2G27760 35.246 4.21e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0365 K00791 - gmx:100808814 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0365 20 2935400 2946840 Lal20g0365 20 2935400 2946840 ECH