Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0358 ATGAAGAAAACAAGACCATGCTCACATACCAAAATCAGAGGCACCAACAAGATCGTAAAAGCTGGGGATTGTGTGTTAATGCGTCCTTCAGATATAAGGAAGCTACCACGTGTGGCGCTAGTGGAAAAGATTGAGCACGATAATAAAAAAAATCTTAATGTACGTGTAAGATGGTATTATCGTCCTGAAGAATCTACTGGGGGACGCAGGCAGTTCCATGGAGCAAAGGAACTTTTTTTGTCTGATCAATGTGATGTTCAGAGTGCTCAAAACATTATAGGGAAGTGTGTTGTGCACTCCTGTAAGAACGATATTAATCTTCAGAATTTAGGTGCTGCGGATTATTATTGTCGATTCAAGTACAAGCCTGATACAGACACTTTCATACCAGATTTTGTTGCTGTGTATTGCAAATGTGAGATGCCTAGAAACCCGGATGAGTTCATGGTGCACTGTAAGGGGTGCAAGAATTGGTACCATCCTGCTTGTGTGGACATGACTATTGAAGAAGCAAAGAACTTGGACCCTTTTGTTTGTCCCGATTGTCTACCTGCCAATGACTCGAAGAAATCCAAGGCTATATATCCTCTATCACTGCCATATGATGGCGAGCAGGAGATTCCAATGGATCCATTTCAGCAAAGTATTAACGAGAGATTAACGGAAATGGAGAAGACGCTGAACGAATGTAACATGCTTTTGGATGCTTTAATGCGAAGGCTATCGAAGTATCAGTAA 738 0.4146 MKKTRPCSHTKIRGTNKIVKAGDCVLMRPSDIRKLPRVALVEKIEHDNKKNLNVRVRWYYRPEESTGGRRQFHGAKELFLSDQCDVQSAQNIIGKCVVHSCKNDINLQNLGAADYYCRFKYKPDTDTFIPDFVAVYCKCEMPRNPDEFMVHCKGCKNWYHPACVDMTIEEAKNLDPFVCPDCLPANDSKKSKAIYPLSLPYDGEQEIPMDPFQQSINERLTEMEKTLNECNMLLDALMRRLSKYQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0358 245 ProSiteProfiles BAH domain profile. 17 132 IPR001025 GO:0003682
Lal20g0358 245 SMART PHD_3 136 183 IPR001965 -
Lal20g0358 245 SMART BAH_4 17 132 IPR001025 GO:0003682
Lal20g0358 245 ProSiteProfiles Zinc finger PHD-type profile. 134 185 IPR019787 -
Lal20g0358 245 Pfam BAH domain 19 130 IPR001025 GO:0003682
Lal20g0358 245 Coils Coil 220 245 - -
Lal20g0358 245 ProSitePatterns Zinc finger PHD-type signature. 137 182 IPR019786 -
Lal20g0358 245 PANTHER OS08G0421900 PROTEIN 11 200 - -
Lal20g0358 245 SUPERFAMILY FYVE/PHD zinc finger 127 190 IPR011011 -
Lal20g0358 245 Pfam PHD-finger 136 184 IPR019787 -
Lal20g0358 245 PANTHER BNAC03G64850D PROTEIN 11 200 IPR045205 GO:0006325|GO:0035064
Lal20g0358 245 Gene3D - 2 128 IPR043151 -
Lal20g0358 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 195 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0358 Lal-Chr20 2879380 2887596 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal20g0358 BAH 6.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0358 K25868 - gmx:100800993 292.737