Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0349 ATGCGATCCGGTTCGTCATTGGAGGAGAGCAACATTGTTCGTTCATCACGGCTTCGAAAGAAGCACAAGAGATTGGATGCAATTTATAAGGAGGAGCACAATCGGAACCATGGTGAGGTCAATGATGATGTTGTTTTTAGGCATGATGCAGGGATTCGCCGCAGTTCGCGAGTTCGGCGTGCCCCGGATTTGCTAGATGCCTCTCCTCCTCCACCGAAGAAACGCCCTAGATTAGGGGTTAATGGAATAAAGAGGGGTTTGGATGGTGTTAAGAGTTTAGAGATGGAAAATGTGAGTTCTAGCGGTGTCAAGGAGAGTCCGGGGACATGGGGTTCAAGGTTGAGATCACGGGTTAGGAATGTAGGTGTTGAAGTGGAGGAGAAGAAGGAACCTAGGGTTAGGAATGTTGGTTTTGAGTTGAAGGGGGAGAGAGAATCTCGCCATGGGAAAAGGAAGCTTTTTGATGATGCGGTAGGAAGTGTGGATGATGAGGAGTTGGAGGTTGTAGAGATAGATAACAAAGAGGAGTTGGAGGATGTAGAGGTAGATAACATAGAGAAATTGGAAGGTTCCATGCCGAAGATAGTTAAGTCTAAGAGGCCAGGGAGGATCAAAGCCACGAAGAATGAGTCTCATGGCAGTTTAGATGAGAGCAAGAGTCAAGAAGCGGAGTTTGTATTGGAAAAAGATAATGATGAGGAGACTGCTTCAATTCCGGAAAATGAGTTGTCCGAAGGGAAAGGCATATTGGACGAAAGTGCCCCTCCAATGATAGAGAATGAGACAAACATGTCAAACAATTTGCAAGCTGAGGAGTATGGCGGCAGCATTGAACCATCTCCGGTGGAATGTATAGATAAACTGGATGGTCAGTTAGGGAGTGTAAAGGAAGGGCAAAATGCTAGTGATGCAGCTGAAATTGCTGGAATTTTGACAAAACCAGTAAGAAACGAACGGTCTGTTCATAAGGAGGCTAACATTGATGAAAATAACTTAAAAGATGTATGTACTGCGAGGACGGATGAGTTGAAACAGGCTTCAAACGACAAGGCTGGCCTCCGGCGTATCAAAGAGGGTAGGCGGTGTGGGTTGTGTGGTGGAGGGACTGATGGCAAGCCTCCAAAAAGGTTAACTTATGATAATGGGGAGAGTGAGAATGAGGCATATAGTGGGTCTTCCGCTTCAGAGGAGCCTAATTATGATGTCTGGGACGGTTTCGGTGATGAACCTGGTTGGCTTGGCCATCTCTTGGGTCCTACTAATGATCGTGATGGTATTGCTAGAATATGGGTGCATCAGCTCTGTGCTGTATGGAGTCCAGAGGTTTATTTTGCTGGCTTGGGATGCTTAAAAAATGTGAGAGCTGCACTTTGCAGAGGAAGAGCATTGAAGTGCACTCGTTGTGGGAGGCGAGGGGCAACCATTGGTTGTCGTGTTGATCGTTGTCCAAAAACTTATCACTTGTCTTGTGCAAGAGCAAATGGTTGCATCTTTGATCATCGTAAATTTCTTATTGCCTGCACAGACCATTGGCATCTCTTCCAACCTCATGGTACTAAATATTTAGCTCACATGAGGGCTAGGAAAATGAAGCTAGAGATGAAAAAGCGCTCAAATGATGCTCTGAGGAAGGATATTGGCGAAGAAGAGAGATGGTTGGAAAATTGTGGTGATGATGAAGAGTTTTTGAAACGCGAGAGCAAGAGGCTTCACCGCGATTTATTGAGAATAGCTCCAGTTTACATTGGAGGCTCAGACTCTGCCTCTGAAAAACCATTTCAGGGATGGGAAGCAGTTGCTGGGCTTAAAGATGTCATCCGGTGTTTGAAAGAAGTTGTTATTTTGCCTCTACTATATCCCGAACTCTTTGATAATTTAGGGCTTACACCCCCGAGAGGTGTTCTTTTGCATGGGTATCCCGGAACAGGGAAAACCTTAGTGGTTCGAGCATTGATAGGTGCATGTGCTCGTGGCGATAAACGGATTGCATATTTTGCTCGTAAAGGTGCAGATTGCTTGGGGAAATATGTGGGAGATGCTGAGCGCCAACTAAGACTGTTATTTCAGGTTGCTGAGAAATGTCAACCTTCTATAATATTCTTTGATGAGATTGATGGACTGGCACCATGCCGCACTAGGCATCAAGATCAGACACATAGTTCTGTTGTGTCAACATTGCTTGCTCTTATGGATGGTTTGAAATCTAGGGGTTCAGTTATAGTTATTGGGGCAACAAACCGTCCTGACGCTGTTGACCCAGCACTTAGGCGCCCTGGAAGGTTTGATAGGGAAATTTATTTTCCATTGCCGTCAGTTGAGGACAGAGCTTCCATTCTCTCAGTTCACACCCAGAGGTGGCCAAAACCGATTAGTGGATCATTGCATGAGTGGATTGCAAGAAAAACTCTTGGCTATGCTGGTGCAGATCTCCAGGCTCTTTGTACTCAAGCAGCCATCAATGCTTTGAAAAGGAATTTTCCTTTGCAAGAAGTGCTGTCTGTTGCTAAAGAAAAACATTCTTGTTGTAAACACCTTCCTCTTCCATCCTTTGCAGTTGAGGAGAGAGATTGGTTAGAGGCTTTTTTGCGTTCCCCTCTACCATGCTCCAGGAGAGAAGCCGGAAATGCTGCTAATGATGTAGTGTGCTCCCCTCTTCCCACCCACCTTATTCCTTGTTTATTGCGGCCGTTGTGCACTCTTCTTGTATCACTTTATCTTGATGAACGTGTATGGTTGCCACCTTCTATATCTAAAGTTGTAAGAATGATTAAGACAGTTATGATATCTGCTCTAGAAAAAAAGAAAATGAGTATTGACCGCTGGTGGTTGTATGTTGATGATTTTCTTCAAGAAACACATATTGCTTTGGAGGCAAAGAGGAAGCTTGCCTGTGCCGGCATTTTATCTGTTAATGATTCTCCTGATACTGTAGATGATACTGATGATGGTGAGGTGAACTTTGAACCCTCCATGAAGAACAATGTTTGCATGCGTAATGGTTTATTGCCGAACATGTCAATTGCATTGACTAACAAATCAGGATTTCGTATATTGATTTCTGGAAATACCCGATCTGGCCAGAGACATCTTGCTTCTTGCCTTCTTTACTGCTTTGTTGGGAATCTTGAAATACAGAAGATTGATATGGCAACTATTTCACAAGAAGGCCGTGGAGATGTAGTGCAAGGGATTGCACAAATACTAATGAGATGTGCTAGCTTGCAATCAAGCATAGTATTCATGCCGAGAATTGACTTGTGGGCTGTTGAGAAACATTTCCAAAATGTTGAGAAGACATATTCCTGCTCAACAAATCATCTTTTACCTGGGATGGAAAAGTCTTGTTTCACATCAAGCCAAGTTGAGAAAGAAAATAAGTTAAATACTGAGATAAACTCAGCAGAGATGACCAAAAGCCAGACCAACAAAAAGGCTTCACATGCCTGGATGTCATTTATTGAGCAGGTGGAGTCCATTGGTGTATCCACATCCTTGATGATTCTGGCTACTTCAGAAGTTCCTTATGCAGAACTTCCATGTAAAATAAAGAAATTCTTCCAGACTTATCAATCTAATGGCAGCCAATCAACTCCTTTGGAGCACACAGTTCCTCGATTTTCTCTACAGATTGGTGGGAATTTCGATCATGACATGATAATCAATCTATCTGCAGCAGAGCTATTGAGAAATTTGGTTGAGCAGCAGGTTCAATTGATTCATAAGAGGTCTCATGCTCATATAGGTATTCAAAAGAGCTGCAGAGCCTATGGTTCAATTGAAATTTGTAAAGATAAGGTATGTCAGAGAAAAGATAGCGGGTCAGCTAATGAAAAAAAGAGTGAAACCCACCTTCCTGAGTCCTCTGCAAAAGCTCCACCACCACCCAACAGTAGGTCATTGAAGGGAAAATCAACCCGTTTGTTGGCAATATCCACATTTGGCTATCAAATTCTTCTAAACCCACATTTCGCTAAACTCTGTTGGGTCACATCAAAACTCAAAGAAGGTCCTTGTGCTGATGTGAGTGGACCTTGGAGGGGATGGCCTTTCAATTCCTGTATAGTTCGTCCTAATGTTTCACAAGACGAGGTGGCAGTTCCTTATAGCTCTGGTGGCATTAAAAGCAAAGAAAGATCTGGTAATTTAGTCAGAGGTTTGGTTGCTGTTGGTTTATCAGCATACAGAGGTGTTTATAAATCAGTGAGGGAAGTTTCTCTTAATGTAAGGAAGGTTCTTGAGATCTTAATTGAACAAATCAATGCAAAAATTCAAGCAGGGAAAGACAGATATCAATATCTTCATATTTTATCACAAGTGGCGTATTTGGAAGATATGGTCAACAACTGGGCATATGCATTGCTGAGTCTGGAGCCGGGTTCCCCTGAGATTGCAGAAAAGGTTATGTCATCAACTGTTGGGCCTTTAAACAATCATATCACATGTGAAGATCACCAAGCTGAAGGTGATGACCGCCATTTGGTTGTTCCGAAGAATGATGATTTGAAGACACTGGAGAGGAGTGGTAACGAAATTCCGGCTGAAACAACTGGTTGTGTTGGCTTGAATGTCAAAAATGGTAATTTAGATAGTCTTGATCACGATGTTCAAAATGCAAGTCCTGAAGGAACTCTACAGAACCATACGCTTCCAGATAAGCAGATTAACAGTTCTGCTGCTTCCAACCAGCCTCTTAATCCATCTTTAAATCAAGAGAATGTGTCATCATTTGGACTATCTGAGTCGGCAACTGTCTGTGAACAAGAAGGTGTTGAGCTTGGTAACTCCAACACAGATGAAGTGAAATTAAATGACGCCTTTTCAAGTGAGGGCAGTGATCATACTGAATATGGAGTAATTTGCTTTTACCAATGTTGCCCTGGATGTATCTCCAATCTCTATCATTTGACACAGAAAGTACTTCTTCGCGAGTATCGTTCGAATAATAGCCATTGGACAGTAGAAGATGTACATGACACTGTTGCATCATTATCTGTCGATCTTATTTCAGCACTTAGAAAATGTTATCTAGCCGAAGATTTCAATGATTCATCTAACAAAACCTTACGACAAGAAAAGCATGGAAGAACATGTTATCCATTAAACCAAGGCAAGGATATTGTACCAGTTGAATGTGTTTCTCATTCAACAAGTCAAGGTGCAACTGGAAGCAAAAATGAGTTACTGAATGAATCACTGAAACTTGATTTGAAATTTATTTTCAGAGATGGTGTACTAATGCTTATGGACCCAGATAAAGATGTCCCTCTTCACTGTAAATTTGAGAACTTGTGCCTTTGTTCTGTAAGAGAGTTAATAGAAATGATGAAGCACCCTTTTGATTAA 5343 0.4239 MRSGSSLEESNIVRSSRLRKKHKRLDAIYKEEHNRNHGEVNDDVVFRHDAGIRRSSRVRRAPDLLDASPPPPKKRPRLGVNGIKRGLDGVKSLEMENVSSSGVKESPGTWGSRLRSRVRNVGVEVEEKKEPRVRNVGFELKGERESRHGKRKLFDDAVGSVDDEELEVVEIDNKEELEDVEVDNIEKLEGSMPKIVKSKRPGRIKATKNESHGSLDESKSQEAEFVLEKDNDEETASIPENELSEGKGILDESAPPMIENETNMSNNLQAEEYGGSIEPSPVECIDKLDGQLGSVKEGQNASDAAEIAGILTKPVRNERSVHKEANIDENNLKDVCTARTDELKQASNDKAGLRRIKEGRRCGLCGGGTDGKPPKRLTYDNGESENEAYSGSSASEEPNYDVWDGFGDEPGWLGHLLGPTNDRDGIARIWVHQLCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHLSCARANGCIFDHRKFLIACTDHWHLFQPHGTKYLAHMRARKMKLEMKKRSNDALRKDIGEEERWLENCGDDEEFLKRESKRLHRDLLRIAPVYIGGSDSASEKPFQGWEAVAGLKDVIRCLKEVVILPLLYPELFDNLGLTPPRGVLLHGYPGTGKTLVVRALIGACARGDKRIAYFARKGADCLGKYVGDAERQLRLLFQVAEKCQPSIIFFDEIDGLAPCRTRHQDQTHSSVVSTLLALMDGLKSRGSVIVIGATNRPDAVDPALRRPGRFDREIYFPLPSVEDRASILSVHTQRWPKPISGSLHEWIARKTLGYAGADLQALCTQAAINALKRNFPLQEVLSVAKEKHSCCKHLPLPSFAVEERDWLEAFLRSPLPCSRREAGNAANDVVCSPLPTHLIPCLLRPLCTLLVSLYLDERVWLPPSISKVVRMIKTVMISALEKKKMSIDRWWLYVDDFLQETHIALEAKRKLACAGILSVNDSPDTVDDTDDGEVNFEPSMKNNVCMRNGLLPNMSIALTNKSGFRILISGNTRSGQRHLASCLLYCFVGNLEIQKIDMATISQEGRGDVVQGIAQILMRCASLQSSIVFMPRIDLWAVEKHFQNVEKTYSCSTNHLLPGMEKSCFTSSQVEKENKLNTEINSAEMTKSQTNKKASHAWMSFIEQVESIGVSTSLMILATSEVPYAELPCKIKKFFQTYQSNGSQSTPLEHTVPRFSLQIGGNFDHDMIINLSAAELLRNLVEQQVQLIHKRSHAHIGIQKSCRAYGSIEICKDKVCQRKDSGSANEKKSETHLPESSAKAPPPPNSRSLKGKSTRLLAISTFGYQILLNPHFAKLCWVTSKLKEGPCADVSGPWRGWPFNSCIVRPNVSQDEVAVPYSSGGIKSKERSGNLVRGLVAVGLSAYRGVYKSVREVSLNVRKVLEILIEQINAKIQAGKDRYQYLHILSQVAYLEDMVNNWAYALLSLEPGSPEIAEKVMSSTVGPLNNHITCEDHQAEGDDRHLVVPKNDDLKTLERSGNEIPAETTGCVGLNVKNGNLDSLDHDVQNASPEGTLQNHTLPDKQINSSAASNQPLNPSLNQENVSSFGLSESATVCEQEGVELGNSNTDEVKLNDAFSSEGSDHTEYGVICFYQCCPGCISNLYHLTQKVLLREYRSNNSHWTVEDVHDTVASLSVDLISALRKCYLAEDFNDSSNKTLRQEKHGRTCYPLNQGKDIVPVECVSHSTSQGATGSKNELLNESLKLDLKFIFRDGVLMLMDPDKDVPLHCKFENLCLCSVRELIEMMKHPFD 1780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0349 1780 Gene3D - 595 769 IPR027417 -
Lal20g0349 1780 Pfam PHD-like zinc-binding domain 432 510 - -
Lal20g0349 1780 ProSiteProfiles Extended PHD (ePHD) domain profile. 391 511 IPR034732 -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 383 397 - -
Lal20g0349 1780 Pfam ATPase family associated with various cellular activities (AAA) 634 769 IPR003959 GO:0005524|GO:0016887
Lal20g0349 1780 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 828 IPR027417 -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 373 399 - -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 57 84 - -
Lal20g0349 1780 Pfam AAA+ lid domain 796 827 IPR041569 -
Lal20g0349 1780 ProSitePatterns AAA-protein family signature. 739 757 IPR003960 GO:0005524|GO:0016887
Lal20g0349 1780 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 512 IPR013083 -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 203 236 - -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 1534 1572 - -
Lal20g0349 1780 Gene3D - 770 830 - -
Lal20g0349 1780 PANTHER AAA DOMAIN-CONTAINING 49 1776 IPR045199 -
Lal20g0349 1780 SMART AAA_5 630 771 IPR003593 -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 1272 1301 - -
Lal20g0349 1780 MobiDBLite consensus disorder prediction 196 266 - -
Lal20g0349 1780 CDD AAA 628 769 - -
Lal20g0349 1780 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 49 1776 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0349 Lal-Chr20 2809173 2816751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0349 590 831 Calmodulin-binding Proteins AT3G56690 41.803 2.88e-46 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0349 - - gmx:100803849 2315.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0349 20 2809173 2816751 Lal20g0349 20 2809173 2816751 ECH
Lal20g0349 20 2809173 2816751 Lal11g1445 11 17804750 17812571 LSH