Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0345 ATGGCTCCAAGGGATAGAACCGCCGCTCTCACCGTCGCAACAACTCCTACCACCACCCACCTCGCCGCCGCCAAAGAGATCCGCTATAGAGGCGTTAGGAAGCGTCCGTGGGGCCGTTACGCCGCTGAGATCCGGGATCCTGGCAAGAAGACACGTGTCTGGCTTGGAACCTTTGATACCCCTGAAGAGGCGGCGCGTGCTTATGACGCTGCAGCACGCGAGTTCCGAGGCGCAAGAGCGAAGACAAATTTTCCCACCGCTTCAGAACTTATGAATATAAACATTAATAACAACACTGTTACACGTAGCCCTAGTCAAAGCAGCACCGTTGATTCTTCTTCACCGCCACCACCGCCGCCTCTGGCACTCTCCCTCACCCCATTCTCCTCCTCCGACAATATGTCCTACCCGGTGGCGCGTCCCGTGGTGTTCTTCGACGTGTTTGCTAAACATGTCAGCCGTGAAATTTGTGCTATGGATCGCCATGTGGCTGAGTTCCGTCGTGCCTCCACCGTTACCACCGTCGTTAAGTGCGAATCTGATTCTTCATCAGTCGTGGATTATGAGCGTGTCCCACGTCATAGACTCTTAGATCTTGACCTTAATCTACCTCCACCACCTGAGGTTGCATGA 633 0.5434 MAPRDRTAALTVATTPTTTHLAAAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTPEEAARAYDAAAREFRGARAKTNFPTASELMNININNNTVTRSPSQSSTVDSSSPPPPPPLALSLTPFSSSDNMSYPVARPVVFFDVFAKHVSREICAMDRHVAEFRRASTVTTVVKCESDSSSVVDYERVPRHRLLDLDLNLPPPPEVA 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0345 210 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Lal20g0345 210 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Lal20g0345 210 SUPERFAMILY DNA-binding domain 28 86 IPR016177 GO:0003677
Lal20g0345 210 MobiDBLite consensus disorder prediction 98 126 - -
Lal20g0345 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 22 200 - -
Lal20g0345 210 CDD AP2 28 87 IPR001471 GO:0003700|GO:0006355
Lal20g0345 210 Pfam AP2 domain 28 77 IPR001471 GO:0003700|GO:0006355
Lal20g0345 210 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 200 - -
Lal20g0345 210 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Lal20g0345 210 Gene3D AP2/ERF domain 27 87 IPR036955 GO:0003700|GO:0006355
Lal20g0345 210 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0345 Lal-Chr20 2793038 2793670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0345 24 149 AP2-EREBP Transcription Factor Family AT3G15210 62.044 1.06e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g0345 AP2 6.5e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0345 K09286 - zju:107432572 180.644
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0593 2 3553399 3553986 Lal20g0345 20 2793038 2793670 ECH
Lal20g0345 20 2793038 2793670 Lal5g1719 5 19315325 19315897 ECH
Lal20g0345 20 2793038 2793670 Lal11g0203 11 1451601 1452254 ECH
Lal20g0345 20 2793038 2793670 Lal20g0345 20 2793038 2793670 ECH