Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0343 ATGGCTGCCAGAGAAATCCTCAATAAGATGAAGGAAAAAGTGTTGGGTTCATCAGATTACGATTCAGGGAAAGGAAAGAGCAAGATGTCGAAGAACATAACTCATGGCTTTTATTTGGTAAAGGGAAGATCATATCATGCCATGGAGGACTATGTTGTTGCTCAATTTAAGAAAGTTGAAAACAATGAATTAGGCTTGTTTGCGATATTCGATGGCCATGCAGGTCACAACGTTCCTAATTACTTGCGCTCTCATTTGTTCGATAATATCTTAAATGAGCCTGACTTCTGGAAAGAACCTACAGATGCTATGAAGAGAGCATATGATGTAACTGATTCCACTATTTTAGAGAAATCAGGTGAATTGGGTAGAGGGGGTTCAACTGCAGTTACAGCAATATTGATCAATGGTCAGAAGTTAGTAGTAGCCAATATCGGCGACTCTCGTGCTGTCTTATGCAAGAATGGTGTGGCCAAACAAATATCAGTAGATCATGAACCAACCACAGAAAGTGAGGATATACAGAATAGGGGTGGTTTTGTATCAAGGGGGTTTTATGCTGTTGTGAGTGCTAAGGATACAACTTTTGTCATAAATTCAGGGGATGTTCCACGAGTTGATGGGAGACTAGCAGTTTCGAGGGCATTTGGTGACAAAAGCTTGAAGAAACACTTGAGTTCAGAACCATATGTGACAGTGGAGATGATACATGATGATGCAGAGTTTATCATATTGGCTAGTGATGGATTGTGGAAGGTAATGTCAAATCAAGAAGCAGTTGATACTATCAGAGATTTAAAGGATGCTCGGTCTTCGGCGAAGCGCCTTACGGAAGAAGCACTCGATAGGAAAAGCACAGATGATATATCTTGCATTGTTGTGAAATTTCAATGA 894 0.4027 MAAREILNKMKEKVLGSSDYDSGKGKSKMSKNITHGFYLVKGRSYHAMEDYVVAQFKKVENNELGLFAIFDGHAGHNVPNYLRSHLFDNILNEPDFWKEPTDAMKRAYDVTDSTILEKSGELGRGGSTAVTAILINGQKLVVANIGDSRAVLCKNGVAKQISVDHEPTTESEDIQNRGGFVSRGFYAVVSAKDTTFVINSGDVPRVDGRLAVSRAFGDKSLKKHLSSEPYVTVEMIHDDAEFIILASDGLWKVMSNQEAVDTIRDLKDARSSAKRLTEEALDRKSTDDISCIVVKFQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0343 297 PANTHER PROTEIN PHOSPHATASE 2C 39-RELATED 1 297 - -
Lal20g0343 297 ProSitePatterns PPM-type phosphatase domain signature. 66 74 IPR000222 GO:0043169
Lal20g0343 297 PANTHER PROTEIN PHOSPHATASE 2C 1 297 IPR015655 GO:0004722|GO:0006470
Lal20g0343 297 SUPERFAMILY PP2C-like 30 296 IPR036457 -
Lal20g0343 297 SMART PP2C_SIG_2 50 296 IPR001932 -
Lal20g0343 297 SMART PP2C_4 29 294 IPR001932 -
Lal20g0343 297 ProSiteProfiles PPM-type phosphatase domain profile. 34 296 IPR001932 -
Lal20g0343 297 CDD PP2Cc 35 296 IPR001932 -
Lal20g0343 297 Pfam Protein phosphatase 2C 48 289 IPR001932 -
Lal20g0343 297 Gene3D - 29 297 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0343 Lal-Chr20 2771133 2774267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0343 1 297 PP2C-type Phosphatase Gene Family AT3G15260 68.092 1.32e-150 421
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0343 K17506 - gmx:100500617 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0343 20 2771133 2774267 Lal20g0343 20 2771133 2774267 ECH