Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0341 ATGGTGCTGCTAAGATGCTTCTTTGTAACACTTTTGCAGTGGTGTTTCTTTGCTTGCTTACTTTACCTGTCTTTGGGTTTTAACAACCAAACACTATCATGTGACCTGAATGATTTATCAGCTCTGAAGGAATTTGCAGGTAACCTTACTAAAGGCACTATCATCACATCATGGTCCAATGATACTGAATGCTGTAATTGGGTTGGAGTTGTTTGTGATAGTAATGTAAGTGGTGATGGTGAAAGTGGTAGAGTTACCAAGTTGGTTCTGCCTGAAATGGATCTCAATGGGACTATTTCATCTTCTCTAGCTCAGCTAGATCAGCTTATTTTGTTGAATCTCTCAATCAATCATCTTGTTGGTGGAATTCCTATAGAGTTCTCCAAGTTGAAGCAGTTGAGGTTTCTTGATTTGAGCCATAATATGCTGTCTGGACAAGTTACTGGTGCACTTTCTGGTTTGGAATCAATTAAGATATTGAATGTTTCTAGCAATTTGTTTTCTGATGACCCTTTTTTCCAACTTGGTGAATTGCCACATCTCATTGCTCTCAACATGAGTAACAATTCATTCACTGGCAGGTTCAATTCTCAAATTTGCAGTGCTTCAAAGGGTCTTCACACCCTTGATTTATCTGCAAATCATTTTGATGGTGATCTTGAAGGCTTGGACAATTGCAGCACCTCTCTCAAAAATGTTCATTTGGATTCCAATTCATTTTCTGGCTCTCTTCCAGATTCCTTGTATTCAATGTCAGCTTTGGAGCAATTCTCAGTCTCTGCCAATAATTTATCTGGCATATTGAGCAAAAATCTGAGTAAGCTTTCTAGTCTAAAAGCTTTAGTAGTTTCTGGAAACCAGTTTTCAGGGGAACTCCCAAATGTGTTTGGGAACCTTTTGCAGCTAGAACAATTAGTAGCACATTCCAATTCAATTTCTGGATCTTTGCCTTCCACTTTGGCTTTATGCTCAAAGCTTAGAGTGCTTGATCTTAGAAATAATTCCTTGTCAGGTACTATTGATCTTGATTTCACTAGGTTGTCTAATCTTAACACACTCGATCTCGCTAGTAATCATTTTACTGGACACCTTCCTAGTTCCTTGGCCTATTGTCATGAATTGAAAGTTTTAAGCCTTGCTAAGAATGGGTTAAATGGATCTATCCCTGAAAACTATGGCAACCTGACTTCACTTTCATTTGTGTCCATGTCAAACAACAGCTTAGAGAACTTGTCTGGGTCACTGTCTACTCTGCACCATTGCAAAAATCTCACCACTCTTATCCTCACCAAGAATTTCCATGGTGAGGAAATTCCAGAAAGTGTGACAGCAGGATTTGAGAGCCTTATGGTTTTAGCACTAGGGAATTGTGGTCTTAAAGGCCATATTCCTTCTTGGTTGTCGAATTGCCGGAAATTAGGAGTCCTTGATTTGTCTTGGAACCATTTGAGTGGTAGTATTCCTTCGTGGATTGGTGGAATGGACAGTTTGTTCTACTTGGATTTCTCAAACAATTCTCTCACAGGAGAAATACCAAAAAGTTTGACAGAGTTGAGGGGGCTTATTTCCCCAAATTGTAGCAGATCGAATTTCACTGCATCTGCGGGCATTCCTCTCCTTGTCAAGAGAAACAAGAGTGCTAGTGGGCTGAAATATAACCAGGCATCAAGTTTCCCTCCATCAATATACTTGAGCAACAACATGTTAACTGGAAATATTTGGCCTGAAATTGGTCAATTGAAATCACTGCATGTCTTGGATTTAAGCCGGAACAACATCACCGGTAACATTCCTAGCTCTATGTCTGAGATGGGGAACTTGGAAACATTGGATTTATCTTATAATGATCTCCGTGGAACAATTCCTCCATCATTTAATAACCTCACATTCTTGTCAAAATTCAGTGTAGCCTATAATCACTTGCAGGGAGCAATTCCAACCGGCGGGCAGTTTTTAAGCTTCCCTAGTTCAAGCTTTGAGGGCAACCTTGGCCTTTGTAGGGACATTGATTCTCCTTGCAACGTTACAAATAATGGTTTGAGACCCAAAATTTCTTCTAGTTCTGCCAGAAAATTTGGTAGAAGCAATGTACTTGGCATAACAATCGGCCTTGGGGTAGGGCTTGCACTACTTCTTGCAGTTATTGTGCTAAAAATGTCGAAGAGGGATGGGGATAAGCCAATTGACAACAATGATGAGGAATTCAGTAGTAGGTCACACAGGTTATCTGGAGCACTTGTTTCTTCAAAATTGGTGCTTTTTCAGAATTCAGATTGCAAGGATCTTACAGTTCCAGATTTGTTAAAATCCACAAACAATTTCAACCAAGCAAATATTGTTGGTTGCGGTGGATTTGGTCTTGTCTACAAGGCTAATCTTCCAAATGGCACAAAAGCAGCTATCAAGAGACTTTCTGGGGACTGTGGTCAGATAGAACGTGAATTCCAAGCTGAAGTAGAGGCCCTCTCTAGAGCTCAACACAAGAACCTCGTTTCCCTTAAAGGTTATTGTCGGCATGGCAACGACAGACTGCTGATTTACTCATACATGGAGAATGGAAGCTTGGATTATTGGCTGCATGAGTGTGTGGATGAAAGTTCAGCTCTAACTTGGGACGTGAGACTCAAGATTGCACAAGGTGCTGCTCGCGGATTAGCTTACTTGCACAAGGGTTGTGAACCATACATTGTGCATCGCGATGTTAAATCTAGCAACATTCTGTTGGATGATAAGTTTGAAGCACATTTGGCTGATTTTGGTCTCTCTAGGCTACTTCAACCTTATGATACTCATGTCACAACCGATTTAGTCGGAACTTTAGGATACATTCCTCCAGAATATAGTCAGACACTGACAGCAACCTTCAGGGGCGATGTTTATAGTTTCGGGGTCGTTCTTCTCGAGCTTCTTACGGGTAGAAGGCCTGTAGAAGTCATCAAGGGGAAAAATTGCAGGAATCTAGTGTTTTGGGTGTCTCAAATGAAATCTGAGAATAAGGAGCATGAAATATTTGATCCAGCTATTTGGCATAAGGATCATGAGAAACAGCTGTTGGAGGTGCTGGCCATTACTTGTAAATGTCTAGACCAAAATCCAAGGCAGAGACCCTCCATTGATTCAGTTGTTTCATGGCTTGATGCTGCAAGTTTTAATGGCCCTCAACAGTGA 3168 0.4075 MVLLRCFFVTLLQWCFFACLLYLSLGFNNQTLSCDLNDLSALKEFAGNLTKGTIITSWSNDTECCNWVGVVCDSNVSGDGESGRVTKLVLPEMDLNGTISSSLAQLDQLILLNLSINHLVGGIPIEFSKLKQLRFLDLSHNMLSGQVTGALSGLESIKILNVSSNLFSDDPFFQLGELPHLIALNMSNNSFTGRFNSQICSASKGLHTLDLSANHFDGDLEGLDNCSTSLKNVHLDSNSFSGSLPDSLYSMSALEQFSVSANNLSGILSKNLSKLSSLKALVVSGNQFSGELPNVFGNLLQLEQLVAHSNSISGSLPSTLALCSKLRVLDLRNNSLSGTIDLDFTRLSNLNTLDLASNHFTGHLPSSLAYCHELKVLSLAKNGLNGSIPENYGNLTSLSFVSMSNNSLENLSGSLSTLHHCKNLTTLILTKNFHGEEIPESVTAGFESLMVLALGNCGLKGHIPSWLSNCRKLGVLDLSWNHLSGSIPSWIGGMDSLFYLDFSNNSLTGEIPKSLTELRGLISPNCSRSNFTASAGIPLLVKRNKSASGLKYNQASSFPPSIYLSNNMLTGNIWPEIGQLKSLHVLDLSRNNITGNIPSSMSEMGNLETLDLSYNDLRGTIPPSFNNLTFLSKFSVAYNHLQGAIPTGGQFLSFPSSSFEGNLGLCRDIDSPCNVTNNGLRPKISSSSARKFGRSNVLGITIGLGVGLALLLAVIVLKMSKRDGDKPIDNNDEEFSSRSHRLSGALVSSKLVLFQNSDCKDLTVPDLLKSTNNFNQANIVGCGGFGLVYKANLPNGTKAAIKRLSGDCGQIEREFQAEVEALSRAQHKNLVSLKGYCRHGNDRLLIYSYMENGSLDYWLHECVDESSALTWDVRLKIAQGAARGLAYLHKGCEPYIVHRDVKSSNILLDDKFEAHLADFGLSRLLQPYDTHVTTDLVGTLGYIPPEYSQTLTATFRGDVYSFGVVLLELLTGRRPVEVIKGKNCRNLVFWVSQMKSENKEHEIFDPAIWHKDHEKQLLEVLAITCKCLDQNPRQRPSIDSVVSWLDAASFNGPQQ 1055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0341 1055 SMART serkin_6 774 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0341 1055 Pfam Leucine rich repeat 325 384 IPR001611 GO:0005515
Lal20g0341 1055 Pfam Leucine rich repeat 582 641 IPR001611 GO:0005515
Lal20g0341 1055 SUPERFAMILY RNI-like 228 530 - -
Lal20g0341 1055 SMART LRR_typ_2 395 418 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 494 518 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 604 627 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 130 153 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 580 603 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 275 298 IPR003591 -
Lal20g0341 1055 SMART LRR_typ_2 347 371 IPR003591 -
Lal20g0341 1055 Gene3D Ribonuclease Inhibitor 33 267 IPR032675 -
Lal20g0341 1055 SUPERFAMILY L domain-like 550 677 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 166 284 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 284 442 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 617 1048 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 563 619 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 32 165 - -
Lal20g0341 1055 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 458 519 - -
Lal20g0341 1055 Gene3D Ribonuclease Inhibitor 371 679 IPR032675 -
Lal20g0341 1055 Gene3D Ribonuclease Inhibitor 268 368 IPR032675 -
Lal20g0341 1055 Gene3D Phosphorylase Kinase; domain 1 736 849 - -
Lal20g0341 1055 ProSitePatterns Protein kinases ATP-binding region signature. 780 802 IPR017441 GO:0005524
Lal20g0341 1055 ProSiteProfiles Protein kinase domain profile. 774 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0341 1055 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Lal20g0341 1055 Pfam Protein kinase domain 775 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0341 1055 Pfam Leucine rich repeat N-terminal domain 37 73 IPR013210 -
Lal20g0341 1055 PRINTS Leucine-rich repeat signature 133 146 - -
Lal20g0341 1055 PRINTS Leucine-rich repeat signature 604 617 - -
Lal20g0341 1055 ProSiteProfiles Leucine-rich repeat profile. 606 628 IPR001611 GO:0005515
Lal20g0341 1055 CDD STKc_IRAK 780 1046 - -
Lal20g0341 1055 SUPERFAMILY Protein kinase-like (PK-like) 756 1045 IPR011009 -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 563 619 - -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 32 165 - -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 284 442 - -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 617 1048 - -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 458 519 - -
Lal20g0341 1055 PANTHER PHYTOSULFOKINE RECEPTOR 2 166 284 - -
Lal20g0341 1055 Gene3D Transferase(Phosphotransferase) domain 1 850 1052 - -
Lal20g0341 1055 ProSiteProfiles Leucine-rich repeat profile. 582 604 IPR001611 GO:0005515
Lal20g0341 1055 SUPERFAMILY RNI-like 61 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0341 Lal-Chr20 2763668 2766835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0341 1 1038 Receptor kinase-like Gene Family AT1G55610 34.465 6.86e-167 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lal20g0341 Pkinase 5.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0341 - - gmx:100797812 1651.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0341 20 2763668 2766835 Lal20g0341 20 2763668 2766835 ECH