Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0334 ATGGAGGGTTCTTCTGGTTCTGCTATGCAGAAATCTGGAAGTTCTAGGGGATTAAATGGTTCTGGAGTCTCAGACAGGAATCAAAGGCTTCATTCCCCTGAAAGAAGCCCCCTCTATGGTGACGCACCACAGGATTCTGGCTTTAAAATGGAAAGGAGTAGAGGTCTATTGGCACACGGTGGTCGGCCTAATAATCTGCGTCGATTTTCTGGTTTTTGCAATGATGAAGTAGGGGTTGACCCATTTATTCGTTCTATCGAATGGGGGGATGTTAGTTTGAGGCAATGGTTAGATAAACCTGAACGCTCGGTTGATGTTTTCAAGTGTTTGCACATATTTAGGCAAATAGTAGACTTAGTTAATATAGCACATTCTCAAGGAGTTGTAGTTCATAATGTGAGGCCTTCCTGCTTTTTCATATCATCTTTCAACCATATCTCATTTATTGAATCAGCATCCTGTTCCAATTCTAGCTCAGATTCTTTAGGATATAGACGGAACAACCAAGGTGTTGAGATTAAAAACTTAATATCTACGCATCAAAAGAGTCTAGGAAGTGAAGATTTTGTGCCTGGCAAGACTTCAAAAACTGGTTTATCAGATTCTAGTTGCATGCTGTCAAAAGCCGTGCAAGCTGCTCGTGCATCTTTGATAGAAGAAACAGAAGAGAATAAGATAAAAGATAGGCGAAAGGCTGAAGAAGGAAAGAAAAAATCATTTCCGATGAAACAGATACTGCAAATGGAGATGAGTTGGTACTATAGTTCTGAAGAGCTTGCTGGCACTCCTAGTTCATGTGCTTCAGACGTTTACCAATTGGGGGTTCTCCTTTTTGAGTTATTCTGTCCACTCAGGTCAAGGGAAGAAAAGAGTAGAACTATGTCTAGCCTGAGACATAGAGTTTTTCCTCCACAGTTACTTCAAAAGTGGCCTAAGATAGCTTCATTTTGCTTATGGCTGCTACATCCTGACCCTAGTAGTCGGCCAACGCTGGGGGAGTTGTTGCAGAGTGAGTTCCTCAATGAACAGAGAGATGATATGGCAGAACGTGAAGCAGCGGCAGATCTTACACAAAGGATAGAAGATGTGGAGTTATTGCTAGAATTTCTTATGTTACTTCAGCAAAGAAAACGGGAAATTGCTGAGAAGTTGCAACATAGTATCTCTTTTCTGTGTTCAGATGTTGAAGAAGTGACCAAGCAGCAAACTAGATTTAAAGATATTACCGGCGCTGAACTAGTGAATAATGATTGTTCTGCATCAAGTTTCCCATTCAGGACAGTTATTGATAGTGATGATTCTGCTTGTCTAGGAACCAGAAAACGAGTCAGACCAGGAATGCGTGTTAAAAACATTGAAGAATGTGATGATAGATTAGGTGATGATCAGAATGATCATGATAGTTTTCTTTCAAAGAATTCACGGCTAATGAAGAACTTCAAGAAGCTAGAGTCAGCTTACTTTTTAACACGATGCAGACCAGTCTATTCATCAGGAAAACCGGTGCTTAGACATTCGCCGATAGCAAAGGATAGTAGAGGGTCTGTTGTCATGAGTGAAAGTCGTATCAACAATTTAGGGTCAAAAGAGCAGTTCAGGGATGGAAAAGCTTGGATAAATCCTTTTCTCGAGGGTTTATGCAAGTACTCATCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTGAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTTTGTGCACTCGGTTTCGATCGTGATGGAGAATTTTTTGCCACTGCCGGTGTGAATAAGAAAATTAAAGTTTTTGAATGTGATACGATCATAAACGAGGATTGTGATATCCACTATCCAGTAGTAGAGATGGGTAGCAAGTCAAAGCTAAGCAGTATATGTTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAGGGTGTTGTACAGTTATGGGATGTTACAAGAAGTCAAATACTGTCGGAAATGAAGGAGCATGAGAGGCGAGGAGTAAGCATTGGTGCCATCAAAACAAAGGCGAACATATGCTGCGTTCACTTCCATCCGGACTCGGCTAGTTACCTCACGTTTGGTTCAGCTGATCATCGAATATATTACTATGATCTTCGCAGCCTAAGAGCTCCACTTTGCATATTAGTTGGACATGAGAAGACTGTGAGCTACATCAAATTTGTAGACAGTGTGAACCTTGTCTCTGCTTCCACTGATAACACATTGAAGCTTTGGGATTTATCTAAGTGTACGTCCCGAGTTATAGACACGCCAATTCAATCATTCACGGGTCACATGAACGTTAAGAACTTCGTAGGGCTATCAGTATCCGACGGTTATATCGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCACAAGGCCTTTCCCATGGCAGCATTGTCATTCAAGTTTCATAATACAGATCCACTCTCTGGTCATGAAGTCGATGATGCTGCACAATTTGTCTCTTCTGTTTGTTGGCGCGGTCAATCTTCGACTTTACTCGCTGCAAATTCCACAGGGAATGTCAAAATTCTTGAGATGGTTTGA 2553 0.4113 MEGSSGSAMQKSGSSRGLNGSGVSDRNQRLHSPERSPLYGDAPQDSGFKMERSRGLLAHGGRPNNLRRFSGFCNDEVGVDPFIRSIEWGDVSLRQWLDKPERSVDVFKCLHIFRQIVDLVNIAHSQGVVVHNVRPSCFFISSFNHISFIESASCSNSSSDSLGYRRNNQGVEIKNLISTHQKSLGSEDFVPGKTSKTGLSDSSCMLSKAVQAARASLIEETEENKIKDRRKAEEGKKKSFPMKQILQMEMSWYYSSEELAGTPSSCASDVYQLGVLLFELFCPLRSREEKSRTMSSLRHRVFPPQLLQKWPKIASFCLWLLHPDPSSRPTLGELLQSEFLNEQRDDMAEREAAADLTQRIEDVELLLEFLMLLQQRKREIAEKLQHSISFLCSDVEEVTKQQTRFKDITGAELVNNDCSASSFPFRTVIDSDDSACLGTRKRVRPGMRVKNIEECDDRLGDDQNDHDSFLSKNSRLMKNFKKLESAYFLTRCRPVYSSGKPVLRHSPIAKDSRGSVVMSESRINNLGSKEQFRDGKAWINPFLEGLCKYSSFSKLKVKADLKQGDLLHSSNLVCALGFDRDGEFFATAGVNKKIKVFECDTIINEDCDIHYPVVEMGSKSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQILSEMKEHERRGVSIGAIKTKANICCVHFHPDSASYLTFGSADHRIYYYDLRSLRAPLCILVGHEKTVSYIKFVDSVNLVSASTDNTLKLWDLSKCTSRVIDTPIQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFPMAALSFKFHNTDPLSGHEVDDAAQFVSSVCWRGQSSTLLAANSTGNVKILEMV 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0334 850 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 714 747 - -
Lal20g0334 850 Coils Coil 218 238 - -
Lal20g0334 850 PANTHER PROTEIN SPA1-RELATED 3 665 850 - -
Lal20g0334 850 PANTHER PROTEIN SPA1-RELATED 3 1 664 - -
Lal20g0334 850 Gene3D - 544 666 IPR015943 GO:0005515
Lal20g0334 850 Gene3D - 667 850 IPR015943 GO:0005515
Lal20g0334 850 Gene3D Transferase(Phosphotransferase) domain 1 90 352 - -
Lal20g0334 850 SUPERFAMILY WD40 repeat-like 570 848 IPR036322 GO:0005515
Lal20g0334 850 SUPERFAMILY Protein kinase-like (PK-like) 62 339 IPR011009 -
Lal20g0334 850 Pfam Protein tyrosine and serine/threonine kinase 212 336 IPR001245 GO:0004672|GO:0006468
Lal20g0334 850 ProSiteProfiles Trp-Asp (WD) repeats profile. 714 747 IPR001680 GO:0005515
Lal20g0334 850 MobiDBLite consensus disorder prediction 1 46 - -
Lal20g0334 850 ProSitePatterns Trp-Asp (WD) repeats signature. 732 746 IPR019775 -
Lal20g0334 850 SMART serkin_6 2 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0334 850 Pfam WD domain, G-beta repeat 710 745 IPR001680 GO:0005515
Lal20g0334 850 ProSiteProfiles Protein kinase domain profile. 1 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0334 850 MobiDBLite consensus disorder prediction 1 27 - -
Lal20g0334 850 PANTHER PROTEIN SPA1-RELATED 2 1 664 IPR044630 GO:0009640
Lal20g0334 850 PANTHER PROTEIN SPA1-RELATED 2 665 850 IPR044630 GO:0009640
Lal20g0334 850 SMART WD40_4 563 598 IPR001680 GO:0005515
Lal20g0334 850 SMART WD40_4 754 793 IPR001680 GO:0005515
Lal20g0334 850 SMART WD40_4 604 648 IPR001680 GO:0005515
Lal20g0334 850 SMART WD40_4 664 703 IPR001680 GO:0005515
Lal20g0334 850 SMART WD40_4 804 848 IPR001680 GO:0005515
Lal20g0334 850 SMART WD40_4 707 745 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0334 Lal-Chr20 2697383 2702883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0334 635 747 Miscellaneous Gene Families AT5G08390 25.439 3.84e-07 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Lal20g0334 PK_Tyr_Ser-Thr 6.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0334 - - gmx:100811457 1303.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0334 20 2697383 2702883 Lal20g0334 20 2697383 2702883 ECH
Lal20g0334 20 2697383 2702883 Lal11g1429 11 17677407 17682573 LSH