Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0333 ATGGGTGGCATGTGTTGCAAGGCCTCTGCTATTGAGGATAGCAGGGAGAGCCCGAGGGAGCGATTAGCAAGCAAGGCTACGTTGGAGTCATTTGTATCAAGGGGAACGTCATCAAGGAGGGAGGAAGTGTATCGAGTAAAGGATAGATATGATAACAATGATGGTAGAGTTGCATTGATTGACAAGCAAGTGAGTAGTGGCGCTGTTCGAGTGCAAGGTGATAATTTTGAAAGGAAGAGGGAGAAAATGGAATATGTTGTCACTCAACATCCAGGGATTGGTAGTGTTCCCAAAGCCATTGAAGGGGAGCAGGTTGCAGCCGGATGGCCCTCATGGCTGGCAGCAGTGGCAGGAGAGGCTATCAAAGGATGGTTGCCTCGGCGTGCAGATTCCTTTGAGAAGTTGGATAAAATTGGTCAGGGAACTTATAGCAATGTTTATAGGGCTCGTGATCTTGAACAAAAAAAGATTGTTGCTCTTAAAAAAGTGAGGTTTGATAATCTTGAGCCTGAGAGTGTTCGCTTCATGGCAAGGGAAATTCACATTCTGCGTAGGCTTGATCATCAAAATGTCATAAAACTGGAAGGCCTGGTTACATCAAGGATGTCTTGCAGCTTATACCTTGTTTTCGAGTACATGGAACATGATTTGGCTGGGCTTGCGTCACATCCTGGACTTAAGTTTACAGAAGCTCAGGTTAAGTGTTACATGCAGCAACTTTTACGTGGACTTGATCACTGCCACAGCTGTGGTGTGCTGCACCGTGATATTAAGGGTTCCAATCTTTTGATCGACAACAATGGAATATTGAAGATTGCAGACTTTGGTTTGGCAAGCTTTTATGATCCCAATCAAAATCAGCCACTGACAAGCCGAGTTGTCACTCTTTGGTATAGGCCACCAGAGCTTTTACTCGGAGCCACTTACTATGGCACTGCTGTAGATTTATGGAGTACAGGTTGCATACTCGCTGAGCTGTATGCTGGCAAGCCTATAATGCCTGGAAGAACTGAGGTGGAGCAGTTACACAAAATTTTTAAACTATGTGGTTCACCTTCCGAGGATTATTGGAGAAAATCAAAGTTGCCTCATGCAACAATATTTAAGCCTCAACAGCCCTACATGCGTTGTGTTGCTGAAACATTCAAGGACTTTCCGGCACCTGCAGTAGAACTGATAGAAACCCTTTTATCTATAGATCCCACTGATCGTGGAACTGCAACTTTTGCTTTGAAGAGTGAGTTCTTCTCAACAAAGCCTCTACCCTGTGATCCTTTAAGCTTGCCAAAGTATCCTCCCAGCAAAGAATTTGATGCCAAAGTGCGGGATGAAGAAGCTAGAAGACAAGGAGCAGCAGGAAGCAAGGGCCAGAGACATGATCTGGAGAGAAGAGGAGCAAGACAATCCCAAGCTGTTCCTGCACCTGATGCGAATGCTGAGCTTGTCGTGTCAATGCAGAAGCGACAGGTGCTTAGTAATTCCCAAAGCAGGAGTGAGAAGTTTAATCCTCATCCTGAAGAAGTTGCTTCTGGATTTCCCATTGATCCCCCTAGGCCATCACATGCTGTAGAAGTAAGTGTAGATCCTCAGGCACACCAACATAAAAGGGCCTCCCATTCTGGTCCACTGACTCACCGCGCTGCATGGGCTAAAACTGGGAAGAACCAAGATGATGCTCCAAAGATTTCAATGGGGGGTGACTTATCAACAATGTCAGGCTTAGTCGCAGCCCGGAGGAGTATGTTGTCTGATGATCGCAGAGAAAGGTCTGGATCATCACAACTCGAGGCTCCAAAACTAGTAAGCAGGTTCCCAGGTTCATTCAAGGAGGCCTCTGAGCCGTTGATGCAACAGGATCAGAAGCATCATCCACATGCTCCTCAAAAGGAAGAAGGGAGAGGCAGCAACAAAGACCCTATTCTTGTTGGTTATGGCTCCAAGGGTCATAAAATTCATTATTCTGGTCCATTGCTAGTTCCATCAAGCAACATGGATCAGATGTTGAAAGACCACGACCGGCAAATTCAGGAAGCAGTTAGAAGATCACGCCTCGACAAGGCCAAAATGAGAAGACTTCAAGCTGAAGGGAACCAGATAACCAATTCATTATTTGTTTCTGGTCGTTGA 2127 0.4579 MGGMCCKASAIEDSRESPRERLASKATLESFVSRGTSSRREEVYRVKDRYDNNDGRVALIDKQVSSGAVRVQGDNFERKREKMEYVVTQHPGIGSVPKAIEGEQVAAGWPSWLAAVAGEAIKGWLPRRADSFEKLDKIGQGTYSNVYRARDLEQKKIVALKKVRFDNLEPESVRFMAREIHILRRLDHQNVIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEAQVKCYMQQLLRGLDHCHSCGVLHRDIKGSNLLIDNNGILKIADFGLASFYDPNQNQPLTSRVVTLWYRPPELLLGATYYGTAVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYMRCVAETFKDFPAPAVELIETLLSIDPTDRGTATFALKSEFFSTKPLPCDPLSLPKYPPSKEFDAKVRDEEARRQGAAGSKGQRHDLERRGARQSQAVPAPDANAELVVSMQKRQVLSNSQSRSEKFNPHPEEVASGFPIDPPRPSHAVEVSVDPQAHQHKRASHSGPLTHRAAWAKTGKNQDDAPKISMGGDLSTMSGLVAARRSMLSDDRRERSGSSQLEAPKLVSRFPGSFKEASEPLMQQDQKHHPHAPQKEEGRGSNKDPILVGYGSKGHKIHYSGPLLVPSSNMDQMLKDHDRQIQEAVRRSRLDKAKMRRLQAEGNQITNSLFVSGR 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0333 708 ProSiteProfiles Protein kinase domain profile. 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0333 708 MobiDBLite consensus disorder prediction 426 475 - -
Lal20g0333 708 Gene3D Phosphorylase Kinase; domain 1 119 214 - -
Lal20g0333 708 MobiDBLite consensus disorder prediction 1 22 - -
Lal20g0333 708 MobiDBLite consensus disorder prediction 615 636 - -
Lal20g0333 708 SMART serkin_6 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0333 708 MobiDBLite consensus disorder prediction 614 646 - -
Lal20g0333 708 Pfam Protein kinase domain 132 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0333 708 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Lal20g0333 708 ProSitePatterns Protein kinases ATP-binding region signature. 138 161 IPR017441 GO:0005524
Lal20g0333 708 PANTHER CYCLIN-DEPENDENT KINASE 1 690 - -
Lal20g0333 708 SUPERFAMILY Protein kinase-like (PK-like) 126 423 IPR011009 -
Lal20g0333 708 CDD STKc_CDK9_like 132 416 - -
Lal20g0333 708 Gene3D Transferase(Phosphotransferase) domain 1 215 455 - -
Lal20g0333 708 PANTHER CELL DIVISION PROTEIN KINASE 1 690 - -
Lal20g0333 708 MobiDBLite consensus disorder prediction 578 602 - -
Lal20g0333 708 MobiDBLite consensus disorder prediction 489 513 - -
Lal20g0333 708 MobiDBLite consensus disorder prediction 435 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0333 Lal-Chr20 2689702 2695928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0333 124 455 Core Cell Cycle Gene Families AT5G10270 53.448 1.08e-118 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal20g0333 Pkinase 7.3e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0333 - - gmx:100792173 1288.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0333 20 2689702 2695928 Lal20g0333 20 2689702 2695928 ECH