Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0325 ATGGAAGAAAACTCAAGGGAATCCTCAAACCCTGGTGGTGAAAATGGTTGGTTTGTTTGCAACATTTGCTTGGGCTCAGTTCATGATCCAGTGGTAACACTTTGTGGCCATCTCTACTGCTGGCCTTGCATATATCGGCGGCTTCGCAACCCGACGACATGCCAAATTTGTAATGCAGAAATCTCATTCACATCATTAGTTCCTCTTTACGGCCGCGGAATATCAAACTCAGATTCTATAGCAACAAGGAGAAGCCATATGGGTTTGGAAATACCTCCTAGGCCTATGCCAAATAACTTCAATTATATGCCAACTTTTTCAACAAATGAAGCAGCTTCTAATCAAAATGAACATTTCCATGAGGCAGCAGCAACGTTTCCATTTCAATACTCTAATATAACAACTCATATGTTATGGCAGATATTGGACACTAGAAGGAATGAAATGGAGGCTCATAACTCTCTAAACATGGCTTATATATTTCTTCTCTGCTGTGTTATTCTGTGTCTTCTTTTATTCTGA 522 0.4004 MEENSRESSNPGGENGWFVCNICLGSVHDPVVTLCGHLYCWPCIYRRLRNPTTCQICNAEISFTSLVPLYGRGISNSDSIATRRSHMGLEIPPRPMPNNFNYMPTFSTNEAASNQNEHFHEAAATFPFQYSNITTHMLWQILDTRRNEMEAHNSLNMAYIFLLCCVILCLLLF 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0325 173 ProSiteProfiles Zinc finger RING-type profile. 20 58 IPR001841 -
Lal20g0325 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 6 122 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal20g0325 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 126 173 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lal20g0325 173 SMART ring_2 20 57 IPR001841 -
Lal20g0325 173 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Lal20g0325 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 6 122 - -
Lal20g0325 173 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 126 173 - -
Lal20g0325 173 SUPERFAMILY RING/U-box 16 70 - -
Lal20g0325 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 101 IPR013083 -
Lal20g0325 173 Pfam Zinc finger, C3HC4 type (RING finger) 19 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0325 Lal-Chr20 2629882 2630403 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0325 3 173 C3H Transcription Factor Family AT4G28270 30.049 6.53e-27 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0325 K10666 - qsu:112041191 113.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0325 20 2629882 2630403 Lal20g0325 20 2629882 2630403 ECH