Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0316 ATGACCAAAACGACATTGCTGGACCAAGAAAACGACGACGATGATGACGAGTGTTTCTACGAATCACAAGACCGATTGCTCTCACTTTCTTCATCATGTTCTTGTTCAACTTCCAATTCCGATAACGATGACGAAACCAATGATAATTACCATTTTGCCCCTCTCACTCTCAACAATTACGACGTTTGGATCTCTCAACCTTCTTCCATTTCCGAACGCCGTAACCGTCTCCTCCGCCATTTAGGTCTCGCCGGTGATGTTTCTCTCTCCCGCGGTTATGCCGTTTCCGTTGACAATAACAGCGGCAATAATGCTGATATTTCAAGATCAGTTTCCTCCGATCAACTCACCCGTTGTCGCCAACCGCCACCGCCGGTGACAGAATCCGCCGGCGCCGACTCATCGTGTGCAATGTTCCGTTCGAAATCTGACAGCGCTGTGGATCGCGAGAATTGTAATATTAAGGCTTGTTCTTGTTCCTCTTGTGGTTTGTGTTCTTCTTCCGCTTCGATTCTTTCTGTAAATAACCGTTCTATTAATGGCGCTGCCACCGGTGGTAATGGTTCGCCGAATAAGCCTCCTTCGGGGAAGAATTTGAGGAAGGTGGATGAAATTCAAAGCGAATCGAGGAATTTGAGTGTGGATTTGAGTCATGATTTAGAGAATGAGAAGAGGTTGGAGGAGGGAGAGGCGTGTACTATAAGAGATCTTGATAATGGGAAAGAGTTTGTGGTGAAGGAGGTGAAGGAAGACGGTTCGTGGGAGAAGCTTAAGGAGGTTGGAACAGGGAAGCAATTGACCATGGAAGAGTTTGAGATGACGGTAGGCCATTCGCCGATCGTTCAAGAATTGATGCGGCGCCAGCATGTAGAGGAAGGGAAGGAAGGCGGTTATAACGACAACAAGGACAATGTAGATTCAATTGCAAATGGAGGAGGAATTGAGGGAATAGGTGGGAGTGGGGGCAGTGTAAGTGGTGGTGGTTCTTTTAAATTGAAGAAGAAAGGGAATTGGTTGAAGAGTATAAGGAGTGTAGCGAGCTCGATGGCGGGGCATGGTAGAGAGAGGAGAAGCAGTGATGAGAGGGATACATCATCGGAGAAGGGTGGGAGGAGGTCGAGTTCTGCAACCGATGATAGCCAAGATGCTGCATCATTTCATGGACCTGAGAGAGTGAGGGTTAGGCAGTATGGGAAGTCATGTAAAGACCTTACTGGCATTTATAAGACGCAGGAGATTCAGGCTCATAATGGATCTATATGGAGTATTAAATTTAGTCTGGATGGTAAGTATCTTGCAAGTGCGGGTGAGGATTGTGTGATTCATGTGTGGCAGGTTGTGGAGTCTGAGAAGAAGGGGGAGTTGCTCATGGACAAACCCGAAGATGCAAATGTAAATATGTTGTTTGTCGTCAATGGGTCACTGGATACAACAACGTCCCCTATGAAGGACAACAACCCAGAGAAAAAGAGAAAGGGGAGGTCATCCTTTAGCAGAAAATCGTTGAGCTTGGACCAATTAGTGGTGTCGGACACTGTTTTTGCTCTCACAGAAAAACCCATTTGCTCCTTTCAAGGCCATCTCCATGATGTGCTTGACCTCTCCTGGTCCAAGTCTCAGCACCTGCTCTCATCTTCAATGGACAAAACGGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGTTTAAAAATATTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGCGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGATTGGATTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTAGTTGGTTCGTACAAGGGTAGCTGCCATTTATATAATACATCTGAAAATAAGTTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCGCATCACAAGAAAATTACTGGTTTCCAGTTTGCCCAGGGAAGTTCATCAGAAGTACTTATCACATCTGCTGATTCACGAATTCGGGTTGTTGATGGTGTTGATCTTGTTCATAAGTTTAAAGGATTTCGAAATGCAACTAGCCCAATTTCAGCTTCCCTCGCAGCAAGCGGTAAATATATTGTCTCAGCAAGTGAGGATTCCCATGTATACATCTGGAAAAATGAAGCAGATTGCAGACCCAACAGAAGCAAAGGTGTCACCGTCACTCATTCTTATGAACATTTTCACTGTAAAGATGTATCGGTGGCCATTCCCTGGCCTGGTACGGGTGATACATGGGACCTCCATGCTACACTTTCTGGAGAGCAATCTGAGTTCGATCACAATGCTGATGAGGCCTCATCAGCAAATCATCCTCCTACCCCTGTAGAGGAAAACTTTGGTACGGAGGGTTTGCGATCTGCATCAGCTTATAACAATAGTCCGCGTCACGGCACCATTGCAAGTGCAACAAACAGTTACTTTTTCGATAGAATTTCCTCAACATGGCCAGAGGAAAAACTTCTTCTAGCTGCAAGGAACCGAAGCAGCCCTCGTGTCAGTGTGGATTACTCAAATGGGGTAAGTCAAAACATGTCAGCCTGGGGCATGGTGATTGTAACTGCTGGCCTTCGAGGTGAAATTAAAACTTTCCAAAATTTCGGATTACCACTTCGGATATAA 2700 0.453 MTKTTLLDQENDDDDDECFYESQDRLLSLSSSCSCSTSNSDNDDETNDNYHFAPLTLNNYDVWISQPSSISERRNRLLRHLGLAGDVSLSRGYAVSVDNNSGNNADISRSVSSDQLTRCRQPPPPVTESAGADSSCAMFRSKSDSAVDRENCNIKACSCSSCGLCSSSASILSVNNRSINGAATGGNGSPNKPPSGKNLRKVDEIQSESRNLSVDLSHDLENEKRLEEGEACTIRDLDNGKEFVVKEVKEDGSWEKLKEVGTGKQLTMEEFEMTVGHSPIVQELMRRQHVEEGKEGGYNDNKDNVDSIANGGGIEGIGGSGGSVSGGGSFKLKKKGNWLKSIRSVASSMAGHGRERRSSDERDTSSEKGGRRSSSATDDSQDAASFHGPERVRVRQYGKSCKDLTGIYKTQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESEKKGELLMDKPEDANVNMLFVVNGSLDTTTSPMKDNNPEKKRKGRSSFSRKSLSLDQLVVSDTVFALTEKPICSFQGHLHDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWIDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAQGSSSEVLITSADSRIRVVDGVDLVHKFKGFRNATSPISASLAASGKYIVSASEDSHVYIWKNEADCRPNRSKGVTVTHSYEHFHCKDVSVAIPWPGTGDTWDLHATLSGEQSEFDHNADEASSANHPPTPVEENFGTEGLRSASAYNNSPRHGTIASATNSYFFDRISSTWPEEKLLLAARNRSSPRVSVDYSNGVSQNMSAWGMVIVTAGLRGEIKTFQNFGLPLRI 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0316 899 MobiDBLite consensus disorder prediction 181 212 - -
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 413 446 - -
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 564 598 IPR001680 GO:0005515
Lal20g0316 899 Gene3D - 497 759 IPR015943 GO:0005515
Lal20g0316 899 SUPERFAMILY WD40 repeat-like 407 734 IPR036322 GO:0005515
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 564 598 - -
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 413 454 IPR001680 GO:0005515
Lal20g0316 899 PRINTS G protein beta WD-40 repeat signature 432 446 IPR020472 -
Lal20g0316 899 PRINTS G protein beta WD-40 repeat signature 542 556 IPR020472 -
Lal20g0316 899 PRINTS G protein beta WD-40 repeat signature 584 598 IPR020472 -
Lal20g0316 899 MobiDBLite consensus disorder prediction 197 212 - -
Lal20g0316 899 Pfam WD domain, G-beta repeat 695 732 IPR001680 GO:0005515
Lal20g0316 899 Pfam WD domain, G-beta repeat 411 444 IPR001680 GO:0005515
Lal20g0316 899 Pfam WD domain, G-beta repeat 560 597 IPR001680 GO:0005515
Lal20g0316 899 Pfam WD domain, G-beta repeat 519 554 IPR001680 GO:0005515
Lal20g0316 899 Gene3D - 392 486 IPR015943 GO:0005515
Lal20g0316 899 MobiDBLite consensus disorder prediction 353 375 - -
Lal20g0316 899 MobiDBLite consensus disorder prediction 346 391 - -
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 524 558 - -
Lal20g0316 899 PANTHER WD REPEAT DOMAIN 44 7 899 IPR040324 -
Lal20g0316 899 MobiDBLite consensus disorder prediction 476 497 - -
Lal20g0316 899 MobiDBLite consensus disorder prediction 784 807 - -
Lal20g0316 899 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN-RELATED 7 899 - -
Lal20g0316 899 ProSiteProfiles Trp-Asp (WD) repeats profile. 524 564 IPR001680 GO:0005515
Lal20g0316 899 MobiDBLite consensus disorder prediction 98 132 - -
Lal20g0316 899 SMART WD40_4 691 732 IPR001680 GO:0005515
Lal20g0316 899 SMART WD40_4 558 597 IPR001680 GO:0005515
Lal20g0316 899 SMART WD40_4 517 555 IPR001680 GO:0005515
Lal20g0316 899 SMART WD40_4 406 445 IPR001680 GO:0005515
Lal20g0316 899 SMART WD40_4 645 690 IPR001680 GO:0005515
Lal20g0316 899 SMART WD40_4 600 638 IPR001680 GO:0005515
Lal20g0316 899 MobiDBLite consensus disorder prediction 98 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0316 Lal-Chr20 2515657 2521558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0316 511 729 U-box Gene Family AT1G04510 27.615 1.47e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0316 K20241 - zju:107432447 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0316 20 2515657 2521558 Lal20g0316 20 2515657 2521558 ECH
Lal20g0316 20 2515657 2521558 Lal11g1424 11 17629081 17634364 LSH