Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0313 ATGGGAATTCCAGAAAGAGACCCTCTTTCAGAATTGAGTTTACCACCTGGGTTTAGATTTTATCCAACTGATGAAGAGCTTCTAGTTCAATATCTTTGTAGAAAAGTGGCTGGTCACAATTTCTCTTTACAAATCATTGCTGAAATCGACTTGTACAAATTTGACCCTTGGGTTCTTCCAAGTAAAGCAATATTTGGGGAGAAAGAATGGTATTTTTTTAGCCCAAGAGATAGGAAGTACCCAAATGGTTGTAGACCAAATAGAGTTGCTGGGTCTGGGTATTGGAAAGCTACTGGAACAGATAAAATGATTAGTAGTGAAGGTAGAAAAGTTGGTATAAAAAAAGCACTTGTTTTCTATGTTGGCAAAGCACCCAAAGGGACCAAAACTAATTGGATTATGCATGAGTATCGTCTCCTTCACTCTTCTACAAAGAACGGTAGCACCAAGCTTGATGAATGGGTTCTATGCCGCATATACAAGAAAAACTCAAGTGCACAAAAAACCATCGCAAACGAATACACTCAATACAGTAACGTCTCATCTTCCAATTCCTCCTCCTCCCACATCGACGACGTTCTCGAATCGTTACCTGAAATCGACGACCGTTGCTTCGCCTTGCCACGTGTCAACGACGACAAGCATCTCAACAATTTTCAGCAAAATCTCACCGCTGGAACCTTCGTTGATTGGACTAACCCGGCGGCTATGAACTCAGCAACCGAGTTTGTTAACTCAGGGAACCAAACAATGATGAACTATGGAAATGACCTTTGTGTCCCTGCGCTGATGGAGGAAGAAGTTCAAAGCAAAACGCTGCGGATTGACTATTCCGGTATTTTCCAGCAGGGTGGTCTGAATATGAATGAGTTCTCACATGGGTTTTCAAACAATGTTGATTTAGATGGGTTTAGATATCCGGTTCACCCGGTTGGATTTGGGTTCAGGGAATGA 954 0.4193 MGIPERDPLSELSLPPGFRFYPTDEELLVQYLCRKVAGHNFSLQIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGCRPNRVAGSGYWKATGTDKMISSEGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRLLHSSTKNGSTKLDEWVLCRIYKKNSSAQKTIANEYTQYSNVSSSNSSSSHIDDVLESLPEIDDRCFALPRVNDDKHLNNFQQNLTAGTFVDWTNPAAMNSATEFVNSGNQTMMNYGNDLCVPALMEEEVQSKTLRIDYSGIFQQGGLNMNEFSHGFSNNVDLDGFRYPVHPVGFGFRE 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0313 317 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Lal20g0313 317 Gene3D NAC domain 23 168 IPR036093 GO:0003677|GO:0006355
Lal20g0313 317 PANTHER NAC DOMAIN-CONTAINING PROTEIN 55 1 271 - -
Lal20g0313 317 ProSiteProfiles NAC domain profile. 14 162 IPR003441 GO:0003677|GO:0006355
Lal20g0313 317 PANTHER NAC TRANSCRIPTION FACTOR 56 1 271 - -
Lal20g0313 317 SUPERFAMILY NAC domain 10 163 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0313 Lal-Chr20 2471077 2473227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0313 1 256 NAC Transcription Factor Family AT3G15500 67.279 4.15e-119 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0313 NAM 4.5e-37 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0313 20 2471077 2473227 Lal20g0313 20 2471077 2473227 ECH
Lal20g0313 20 2471077 2473227 Lal11g1404 11 17466104 17468497 LSH