Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0312 ATGGAAAGCACTGACTCATCAACCGGTTCACAACAACAACCGAACCTACCACCTGGGTTCCGGTTCCACCCCACAGATGAGGAACTTGTGGTTCACTACCTGAAGAAAAAAGCTGCTTCAGTTCCTCTTCCAGTTCATATCATTGCTGATGTTGATCTCTACAAGTTTGATCCATGGGAGCTACCAGCTAAGGCAGCGTTTGGGGAACAAGAGTGGTATTTCTTTAGTCCTAGGGATAGGAAGTACCCTAACGGTGCAAGGCCAAATAGGGCTGCAACTTCTGGGTATTGGAAAGCCACAGGGACAGATAAACCTGTGTTAACCTCTGGTGGGTCACAAAAAGTTGGTGTGAAAAAAGCTTTGGTTTTCTATGGAGGGAAGCCACCCAGAGGGATCAAAACCAATTGGATCATGCATGAGTATAGACTTGCTGATAACAAGCCTAATAATAAGCCTCTTGGTTGTGACTTGGGTAACAAGAAAAACTCTCTAAGGCTTGATGATTGGGTACTATGCCGAATCTACAAGAAGAACAATACACATAGGTCCCCGTTAGAACATGAGAGAGAAGATTCAATGGATGAAATGATTGAAAGGATACCTCCTTCAATCAACGTGGGCCAGATGAATGCAAGGTTTCACCTTTCAAAGATGTCCACAAGCTACAGTAATGCATTGTTGGAAAATGACCAAAACTTATATGAAGAAATGGTGCTAAGTAATAATAATAATGGTTTGGGGTCCTCAAATTCTAAGCCAGATCTTCATTTTTTGCCAAATATTACTACTAATAATTCAGCCTCCAAAAGAACACTCTCATCTTTGTATTGGAATGGTGATGATCAAGATGTGACAGTGGCAGGAACCTCATCAACAAACAAAAGGTTCAGTTTAGAAAGTGTTGAACATGATGGAATAAGTGTTGTGAGAACTGAAGAGAATAATAATAATAATAATAATAATGGTACTTCTAGCTCTTTTCTCACTATGCTTAATCAGCTTCCTCAAACACCTTCATTGCATCAACAACAAACAATGCTTGGATCAATAAGTGATGGGTTACTTAGAACAACAACACCATATCAAATAGCAGGAATGAATTGGTATGCTTAG 1113 0.4016 MESTDSSTGSQQQPNLPPGFRFHPTDEELVVHYLKKKAASVPLPVHIIADVDLYKFDPWELPAKAAFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVLTSGGSQKVGVKKALVFYGGKPPRGIKTNWIMHEYRLADNKPNNKPLGCDLGNKKNSLRLDDWVLCRIYKKNNTHRSPLEHEREDSMDEMIERIPPSINVGQMNARFHLSKMSTSYSNALLENDQNLYEEMVLSNNNNGLGSSNSKPDLHFLPNITTNNSASKRTLSSLYWNGDDQDVTVAGTSSTNKRFSLESVEHDGISVVRTEENNNNNNNNGTSSSFLTMLNQLPQTPSLHQQQTMLGSISDGLLRTTTPYQIAGMNWYA 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0312 370 Pfam No apical meristem (NAM) protein 17 143 IPR003441 GO:0003677|GO:0006355
Lal20g0312 370 Gene3D NAC domain 25 182 IPR036093 GO:0003677|GO:0006355
Lal20g0312 370 PANTHER NAC TRANSCRIPTION FACTOR 56 1 332 - -
Lal20g0312 370 ProSiteProfiles NAC domain profile. 16 177 IPR003441 GO:0003677|GO:0006355
Lal20g0312 370 MobiDBLite consensus disorder prediction 1 21 - -
Lal20g0312 370 SUPERFAMILY NAC domain 10 177 IPR036093 GO:0003677|GO:0006355
Lal20g0312 370 MobiDBLite consensus disorder prediction 1 18 - -
Lal20g0312 370 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0312 Lal-Chr20 2449250 2451564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0312 1 370 NAC Transcription Factor Family AT3G15510 52.308 1.91e-120 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lal20g0312 NAM 2.1e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0312 - - vra:106763825 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0312 20 2449250 2451564 Lal20g0312 20 2449250 2451564 ECH
Lal20g0312 20 2449250 2451564 Lal11g1402 11 17449764 17451737 LSH