Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0302 ATGAACCAGAAGGCCAACGTTTCCAAAGAGCTCAACGCTAAGCACAAGAAGATATTGGAAGGGCTTCTTAAATTACCAGAGAATAGGGAGTGTGCTGATTGCAAAGCTAAAGGTCCAAGATGGGCTAGTGTAAATCTTGGCATCTTTATATGCATGCAGTGCTCAGGAATTCATCGAAGTTTGGGGGTTCGTTCTGCAACTCTGGACACCTGGCTTCCAGATCAAGTTGCATTCATTCAATCAATGGGAAATGAGAAAGCAAATAGTTATTGGGAAGCAGAATTACCTCCACATTACGATAGAGTTGGAACTGAGAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTTCACGGGATGGGAAACCAAAATCACCTTCTAGACTGCAGGATGAGAAAACTCATTCACATTGGCAAAGGCCTGCGGAAAGAAGTGGTCATGGTTATGCAGCTGCTTCTGAGAATACTTTTGAGGAAAGGAAGAAAATCCAACCATCAAATGCAATTTCTGCTACAAGAGTTAGTGTTCCAGCTCCTCCCAAAGGACCTGATCATGCAAATCCTGTTACCAAACCTCAGCATGTTGAGAAAGTGGAACAAGTAGCACCACAACCACCAGCTGAAACTTCAAATCAGGCTACAGATACTGCTCAAAATACTCCTCCAAAAGTTGACTATGCTGTGGACCTTTTCAACATGTTGTCTTTGGATAGCCCTAGTGTAATTGACTCACAGGCAGCTGCTGCTACTGCTGATGATAATAACTGGGCTGCTGCTGCAGAGGCATCAACAGCTGAGAAGTCTAATCCGATAGAAGTATTTGAGAGTATTCCCCAGTCCGCATCTGGAATTGAGGATCTATTTAAAGATTCACCTTTAGTTACACCAAGTTTAGCTCCAGCAAAACCAGATAAAGATGTAAAAAATGATATTATGAGCCTCTTTGAGAAGAGCAATATGGTTTCTCCATTTTCTATGCATCAACAGCAGCTTGCCATGTTAGCACAGCAACAATCTCTTCTAATGGCTGCTGCAGCTAAATCTACTGTTGGAGATCCCAAGTATACTGCTAATCCACAACAACCTAGCTCCAGTATTCCTGGTCAGAGTTGGCCACCTGTGGGATACCCAATTTCTGGAGCAATGCCCATGGTTGGTCAGGGAGATCTGCAGAAACTTATGCAGACTAGGAACATGACTCCAGGACATCCACCAGCGAACTCTGTTCTGTATCCTTCATCTGGTTTCTATCCTATGGTGCAAGTTGCTCCAGTTAATGGTATGGTAACAACGGGAGTGAATAAACCTCAGTCTGCTCCAGTGTCATCAACCACATTACAATCTGCAAAAGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCCAAACAATGA 1401 0.4297 MNQKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVRSATLDTWLPDQVAFIQSMGNEKANSYWEAELPPHYDRVGTENFIRAKYEEKRWVSRDGKPKSPSRLQDEKTHSHWQRPAERSGHGYAAASENTFEERKKIQPSNAISATRVSVPAPPKGPDHANPVTKPQHVEKVEQVAPQPPAETSNQATDTAQNTPPKVDYAVDLFNMLSLDSPSVIDSQAAAATADDNNWAAAAEASTAEKSNPIEVFESIPQSASGIEDLFKDSPLVTPSLAPAKPDKDVKNDIMSLFEKSNMVSPFSMHQQQLAMLAQQQSLLMAAAAKSTVGDPKYTANPQQPSSSIPGQSWPPVGYPISGAMPMVGQGDLQKLMQTRNMTPGHPPANSVLYPSSGFYPMVQVAPVNGMVTTGVNKPQSAPVSSTTLQSAKDYDFSSLTQGMFAKQ 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0302 466 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 466 IPR044520 GO:0005096
Lal20g0302 466 Pfam Putative GTPase activating protein for Arf 17 120 IPR001164 GO:0005096
Lal20g0302 466 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lal20g0302 466 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lal20g0302 466 SUPERFAMILY ArfGap/RecO-like zinc finger 15 119 IPR037278 -
Lal20g0302 466 MobiDBLite consensus disorder prediction 205 222 - -
Lal20g0302 466 CDD ArfGap 19 112 - -
Lal20g0302 466 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Lal20g0302 466 SMART arf_gap_3 16 125 IPR001164 GO:0005096
Lal20g0302 466 MobiDBLite consensus disorder prediction 118 143 - -
Lal20g0302 466 PANTHER ARF GTPASE ACTIVATOR 1 466 - -
Lal20g0302 466 MobiDBLite consensus disorder prediction 118 222 - -
Lal20g0302 466 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 125 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0302 Lal-Chr20 2324082 2328991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0302 16 118 C2H2 Transcription Factor Family AT4G05330 44.828 1.96e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0302 K12486 - gmx:100780452 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0302 20 2324082 2328991 Lal20g0302 20 2324082 2328991 ECH