Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0297 ATGGCTAAACCTGAAACTAGCTCTCACAGAAACATTCACCATTACACAACTTCGGATGATGAAGAAAGCTACGATGAAGACGACAATGACAGCAAGGACGGAGCAATTTACAACAAAGACGGCACCGCCGCCGTATTAGGTGGTTCCCGGCGACAACGTAATCGATCGTCGAAAAGGAAACGTGTTTCGGACCCGACATGGGTTGAAGAATGGAACAGAATATACCTTATGGTGTGTGCAGCATCGTTATTCGTGGACCCGTTGTTCGCGTATCCGTTATCAATAAGCATGTCGAATATGTGTTTGTTCGTTGATGGGTGGTTCGCCGTGACGGTCACGGCGTTGCGGTGCATGACGGACATGTTTTATCTGTTGAATATGTTGCTGCAGAAACGAACGTTTAGTAACCGTGGCAGTCATAACACTAAGCATCGTTATCGTAAGAGAGGTTTCATCGTTGATCTCATTGTTACCCTTCCTCTGCCACAGATTGCACTATGGTTGGTAATACCTCTTTTGTTGGAGAACGGATTAATTAAATTGGCGATGATAGTGTACTTCATTATTTTCATTGTTCAATACATTCCCAAAGTTTATCACGCAGCATGCGTCATGCGTAGGATGCATAATCTCAATGACTACATTTTTGGAACCGTTTGGTGGGGTTCTGCCCTTAACTTGATCGGATTATTTCTTGTTTCCCATATTGTAGGGGCATTTTGGTATGTGTTAGGATTGGAAAGAGTAATTGAGTGTCTTGAAGACAAGTGTGAGGACACAAATGGTTGTGGGCGAACAACACTAACATGTAAAGAACCTCTTTACTTTGGAATCACTAATATGGTGAGAGAGCAAACAAGGATGACATGGGCTCAGAACATAGATGCAAGGTCTACATGTTTAGAAGATGGCAAAAGCTATACCTATGGTTTTTATGCATGGGTTGTTCAACTTGTAACTGATGAGAACCGCTTGGAAAAAAGTCTTTTTTCTCTCTTTTGGGGTGTCATGACTCTCTGCACTTTTGGGAACCTACAGACCTCACCTCGTTGGCTAGAAGTGATTTTCAACATTATTGTGTTGACTTGTGGGCTTTTTCTAGTCACCATGTTGATTGGAAACATAAAGGTGTTTTTGAATACTATAACATCGAAGCCGCAAACAATGAAGATGAGGATGAGGAGCATTGAATTGTGGATGAAGAAAAAGCGTTTGCCGAAATCGATCAGAGAGCGTGTTCGTACCTTCGAGCGGCAGCGTTGGGCTGCTACTCGTGGCGTTGATGAATCCGAGTTGATAAACGATCTCCCCGAAGGGTTGAGAAAGGACATCAAGTATCATCTTTGTTGGGATTTAGTGAGACAGGTGCCCCTATTTCAGCATATGGATGATCAAGTTCTAGAGCACATTTGTGACCGTGTAAAGTCCATTGCATTCACTAGGGGAGAAACAATATCAAGAGAGGGAGACCCAGTTCAAAGAATGATATTTGTGGTAAGGGGACACCTTCAAAGCAGTCAAGAACTACATGATGGTGTGAAAAGTTACTGCATGTTAGGACCTGGTAACTTCAGTGGTGATGAACTTCTATCATGGTGTTTAAGAAGACCATTTGTTGAAAGATTACCACCATCTTCATCAACAATGATCACACTTGAAACAACAGAAGCATTTGTGCTTGAAGCATGGGATGTGAAATATGTGACACAACATTTTAGTTACAATTTTGTGAAGGAAAAGGTTATGAATAGTGCAAAGTATTACTCACCTGGATGGAGAACTTGGGCTGCAGTGGCAATTCAATTGGCTTGGAGAAGGTATAAAGATAGGAGCACTTTGACAACTTCTTTGTCCATTAGAAAACCTGATAAACACATGCTAACACCTTCAATGGGAGAGGATAAACTTCGTTTCTATGCTGCTATGTTGAACTCACAAAAGCCTGATAATCATTCCTTTGACTTCGAGTTTTGA 1974 0.4184 MAKPETSSHRNIHHYTTSDDEESYDEDDNDSKDGAIYNKDGTAAVLGGSRRQRNRSSKRKRVSDPTWVEEWNRIYLMVCAASLFVDPLFAYPLSISMSNMCLFVDGWFAVTVTALRCMTDMFYLLNMLLQKRTFSNRGSHNTKHRYRKRGFIVDLIVTLPLPQIALWLVIPLLLENGLIKLAMIVYFIIFIVQYIPKVYHAACVMRRMHNLNDYIFGTVWWGSALNLIGLFLVSHIVGAFWYVLGLERVIECLEDKCEDTNGCGRTTLTCKEPLYFGITNMVREQTRMTWAQNIDARSTCLEDGKSYTYGFYAWVVQLVTDENRLEKSLFSLFWGVMTLCTFGNLQTSPRWLEVIFNIIVLTCGLFLVTMLIGNIKVFLNTITSKPQTMKMRMRSIELWMKKKRLPKSIRERVRTFERQRWAATRGVDESELINDLPEGLRKDIKYHLCWDLVRQVPLFQHMDDQVLEHICDRVKSIAFTRGETISREGDPVQRMIFVVRGHLQSSQELHDGVKSYCMLGPGNFSGDELLSWCLRRPFVERLPPSSSTMITLETTEAFVLEAWDVKYVTQHFSYNFVKEKVMNSAKYYSPGWRTWAAVAIQLAWRRYKDRSTLTTSLSIRKPDKHMLTPSMGEDKLRFYAAMLNSQKPDNHSFDFEF 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0297 657 Pfam Ion transport protein 71 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lal20g0297 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 21 651 - -
Lal20g0297 657 SUPERFAMILY cAMP-binding domain-like 384 572 IPR018490 -
Lal20g0297 657 Gene3D Jelly Rolls 456 573 IPR014710 -
Lal20g0297 657 MobiDBLite consensus disorder prediction 1 20 - -
Lal20g0297 657 SUPERFAMILY Voltage-gated potassium channels 70 379 - -
Lal20g0297 657 SMART cnmp_10 458 587 IPR000595 -
Lal20g0297 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 4 21 651 - -
Lal20g0297 657 MobiDBLite consensus disorder prediction 1 42 - -
Lal20g0297 657 CDD CAP_ED 458 562 IPR000595 -
Lal20g0297 657 Gene3D Helix hairpin bin 384 449 - -
Lal20g0297 657 ProSiteProfiles cAMP/cGMP binding motif profile. 458 561 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0297 Lal-Chr20 2262554 2267901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0297 47 654 Ion Channels AT5G54250 60.979 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0297 K05391 - zju:107430493 824.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0297 20 2262554 2267901 Lal20g0297 20 2262554 2267901 ECH
Lal20g0297 20 2262554 2267901 Lal1g1655 1 18964428 18973707 LSH