Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0287 ATGCTTGCACTATCTCCTCCTATTTTCTCAACAATGGGAATATGGCCCTTAGAAGTTGAACCTACAAGTCTTGATAATAACCAAAACTACTTCAATTTAGATTACTACTCATTTCCTCATCAATTTTCTTCACCTCACTCACCGGTTGAGGTTCAAACATCTACACCATCCTCAGACCCTACTGTGGTGAAGAAACTCAGCCACAATGCTAGTGAACGCGATCGCCGCAAGAAAATCAATACCTTGTATTCCTCACTTCGTTCACTCCTTCCGGTGCAAGATCAAATGAAAAAGATGAGTATTCCAGGAACAATTTCACGAGTCCTAAAATACATACCTGAATTACAAAAGAAAGTGGAAGGACTAATTAAGAAGAAGGAGGAACTTTTATTGAGAATTTCACAACAAGGAGATGCAGTGAATAAAGAATCTCAAAGGAAAATTGCACTTAAGAGTTCTACTTTTATAGTTTCAACAAGTAGGCTCAATGATATTGAGGCTACTATTCATATTTCCACTTATGAAGAGGAAAACAAGATTTCACTATCTATGATCTTGTTGTGTTTAGAAAATCATGGACTTGTACTTCTAAATGCTTCTTCATCTGAAACCTTTGGAGGGAGAATTTTCTATAATTTGCATTGCCAAGTGGAAAAAACTTATATACTGGATTCTGAGATTATAAGTGGAATTCTTTTGTCAATGTTAGAGAAGAATGAAGGGATTTTCTAA 732 0.3579 MLALSPPIFSTMGIWPLEVEPTSLDNNQNYFNLDYYSFPHQFSSPHSPVEVQTSTPSSDPTVVKKLSHNASERDRRKKINTLYSSLRSLLPVQDQMKKMSIPGTISRVLKYIPELQKKVEGLIKKKEELLLRISQQGDAVNKESQRKIALKSSTFIVSTSRLNDIEATIHISTYEEENKISLSMILLCLENHGLVLLNASSSETFGGRIFYNLHCQVEKTYILDSEIISGILLSMLEKNEGIF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0287 243 Gene3D - 57 147 IPR036638 GO:0046983
Lal20g0287 243 SMART finulus 69 121 IPR011598 GO:0046983
Lal20g0287 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 135 IPR036638 GO:0046983
Lal20g0287 243 MobiDBLite consensus disorder prediction 46 72 - -
Lal20g0287 243 Coils Coil 112 132 - -
Lal20g0287 243 Pfam Helix-loop-helix DNA-binding domain 64 116 IPR011598 GO:0046983
Lal20g0287 243 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 235 - -
Lal20g0287 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 63 115 IPR011598 GO:0046983
Lal20g0287 243 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 235 IPR015660 GO:0003700|GO:0006357
Lal20g0287 243 CDD bHLH_AtORG2_like 64 136 - -
Lal20g0287 243 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0287 Lal-Chr20 2145719 2147525 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0287 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 43.701 6.89e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g0287 HLH 5.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0287 - - gmx:100803424 268.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1376 11 17286965 17288696 Lal20g0287 20 2145719 2147525 LSH