Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0286 ATGCTTGCACTATCTCCTCCTATTTTCTCAACAATGGGAATATGGCCCTTAGAAGTTGAACCTATAAGTCATAATAATAATAACCAAAACTACTTCAATAATTCAGATTATTACTCATTTCCTCATCAATTTTCTTCACCTCATTCACCAGTTGAGTTTCAAACATCTACACCATCCTCAAACCCTACAATGGTAAAAAAGCTCAACCACAATGCTAGTGAACGTGATCGCCGCAAAAAAATCAATACCTTGTATTCTTCACTTCGTTCACTCATTCCTCTCCAAGATCAAAAGAAAAAAATGAGCATTCCGGGAACAATTTCACAAGTCCTAAAATACATACCTGAGTTGCAAAAGCAGGTAGAAGGACTAATTAAGAAGAAGGAAGAACTTTTATTAAGAATTTCAAGGCAAGGAGATGCAGTGAACAAAAAATCTCAAAGGAAAATTTCTCCTCAAAATTCTGCTTTTGTAGTTTCAACAAGTAGACTCAATGATATTGAGGCTTCTATTCAGATTTCCACTTATGAAGAGGTTAACAAGATTTCACTATGTGAAATCTTGGTGTGTTTAGAAAATCAAGGCCTTCTACTTCTAAATGCTTCTTCATCTGAAACCTTTGAAGGAAGGATCTTCTATAACTTGCATTATCAAGTGGAAAAAGCTTACAGATTAGAGTCTGACATTGTAAGTGAGATGCTTTTGTCACTGTTAGAGAAGAAAGAAGGGATTTTCTAG 738 0.3496 MLALSPPIFSTMGIWPLEVEPISHNNNNQNYFNNSDYYSFPHQFSSPHSPVEFQTSTPSSNPTMVKKLNHNASERDRRKKINTLYSSLRSLIPLQDQKKKMSIPGTISQVLKYIPELQKQVEGLIKKKEELLLRISRQGDAVNKKSQRKISPQNSAFVVSTSRLNDIEASIQISTYEEVNKISLCEILVCLENQGLLLLNASSSETFEGRIFYNLHYQVEKAYRLESDIVSEMLLSLLEKKEGIF 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0286 245 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 1 239 IPR015660 GO:0003700|GO:0006357
Lal20g0286 245 Coils Coil 114 134 - -
Lal20g0286 245 Gene3D - 59 149 IPR036638 GO:0046983
Lal20g0286 245 PANTHER TRANSCRIPTION FACTOR ORG2-RELATED 1 239 - -
Lal20g0286 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 135 IPR036638 GO:0046983
Lal20g0286 245 Pfam Helix-loop-helix DNA-binding domain 66 118 IPR011598 GO:0046983
Lal20g0286 245 SMART finulus 71 123 IPR011598 GO:0046983
Lal20g0286 245 CDD bHLH_AtORG2_like 66 138 - -
Lal20g0286 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 117 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0286 Lal-Chr20 2136933 2140258 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0286 1 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.353 1.47e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g0286 HLH 5.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0286 - - gmx:100803424 265.003