Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0275 ATGGATCATAGAACTCTCTTCAATCTTGAGTCTTTGATGAACTTTCGACTTCCAGAACAAGATGATGATTTTGATTATTATGGAAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTAGGACAGATGCAAATTGCAGTAATGGGAATATGCATGGAAAGGAGGTGAATTTTTTAAAGAAAAGGAGGTGGTCTCAAAACAGTGACGACGAGGAAGATAGCACTTTTAACATGACAGAGGAGCGATATCGATCAATGCTGGGAGAGCATGTTCTGCAATACAAGAGGAGGGTTAAGGATGTCTCATCTAGTCCTGCCCAGAATGAGGTTTCTGTTCCACTCCTCAAAAGTAATGCTGGCTTAAAAGCTCGCAAGTCTGGGAGTGAGCGCAGGGGAGGATTACATGCTGCAGAGACTACAACCGAATGGATGAATGATTCCAATTATAAGAAAGCGGGAAATCACCGTGATGCTGATTTCGTGCAGCGAAATGGCACTGATAGGACTAACTATGAACCTGCTTCTTTAGATATTGGGGATGGAATCGCTTACAAGATTCCTCCAGTTTATGATAAGTTGGCAGGAATGCTGAACCTTCCGACCTTCACGGATATCCATGTTGAGGACTCTTATTTAAAGGGTTCCTTGGATTTGGGATCCTTGGCCAAAATGATGGCATCTGGTAAAAGGTTTGGGAATAGAAACCGAGCAGGCATGGGGGAAACCATATCCCAATATGAATCACTTCAGGCCCGATTGAAGTTCATGTCATCATCTAATTTAGCTCATAAATTCAGTCTGAAGGTCTCTGATATTGATTTGGATTCCTGCATTCCGGAGGGGGCAGCTGGAAGCATAAAGCGGTCTATTTTGTCCGAGGGTGGTGTGTTGCAGGTTTATTATGTCAAGGTTTTGGAGAAAGGTGACTCCTACGAGATCATTGAACGAAGCCTACCAAAGAAGCAAAAGATAAAGAAAGACCCTGCTTTGATAGAGAAAGAGGAAATGGAAAGAATTGGCAAGATTTGGGTGAATATTGTAAGAAGAGACATACCTAAGCAACATAGGAACTTCACTACTTTTCATCGAAAACAACTCATTGATGCAAAGAGGGTCTCAGAGATCTGTCAAAGAGAGGCATGCCCTGTTAAAATAAAAATTAGTAGATCGCTTAAGTGGCCAAGGACTGCTGGTATGCGCACCCGGAAACTTGCTAGAGACATGTTGCTGTTCTGGAAAAGAATAGATAAGGAGATGAGGATAGGAATATATAGGATTAGGAACGTATGCAATAGAGAGACTGAGAAAGTTGAGGTAGCACATATCGTAGAGAAACTATATGTGAAACTATTGGGGGATTTAGAGGCAGAAGTGAAGAAGAGAGAGGAGAAAGAAGCTGCTGAAGCTTTGAGGCGTGAACAGGAGCTTCGCGAAGCAAGGAGGCAGCAGCAACGTCTTAATTTTCTTATACAACAAACTGAGTTGTACAGTCACTTTATGCAGAACAAGTCAAACTTACCACCTTCAGAAGGTTTACCCATGGTAGATGAAAACACAAATGATCATGATGCACTGGTTGACTCCTCAAATGCTGGACCTAACGAGGAGGAAGATCCTGAAGAGGCTGAGTTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAGAAGTTTGACAAATGCTTTTGACACTGAATGCTTGAGGCTGCGCCAGGTTGATGAAACTGATATGCTTCCACCAGAAGTTGCTGGAGCAAGTAATATTGATTTGCAAACCCCTTCAACCATGCCGGCGGCATCCACAGTTCAGACACCGGAGTTATTTAAAGGTTGTCTCAAAGAATATCAGCTCAAGGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGCTTTTGGTATCTTACAGGGTTTAAATGGTATACTTGCTGATGAGATGGGACTTGGAAAAACCATTCAGGCTATGGAGAAGAACATATGGGGACCTTTTCTGGTTGTTGCACCTGCTTCTGTACTCAACAATTGGAATGAGGAACTTGAGCGCTTCTGCCCTGGACTGAGAAGACTTCCTTATTGGGGTGGGCTTTCGGAGCGAACAGTGCTCAGAAAAAGTATTAACCCTAAGGATCTTTACCGTAGGGAAGCTAAATTCCACATTCTCATTACAAGCTACCAGCTATTAGTATCTGATGAGAAGTATTTTCGTCGTGTGAAATGGCAATACATGGTTTTAGATGAAGCCCAGGCAATCAAAAGTGCAAACAGTATAAGATGGAAGACACTCCTCAGCTTTAATTGTCGGAATCGCCTACTATTGACTGGTACACCTGTTCAGAATAATATGGCAGAGTTGTGGGCTCTTCTTCACTTCATTATGCCAACCTTATTTGACAGCCATGAGCAGTTTAATGAGTGGTTTTCAAGAGGAATTGAGAACCATGCGGAACACGGGGGTACTCTGAATGAGCACCAACTTAATAGATTGCATTCAATTCTAAAGCCTTTCATGCTGCGACGTGTTAAAAAAGATGTAGTTTCTGAGCTGACTTCAAAAACTGAGGTTACAGTGCATTGCAAGTTGAGTTCTCGGCAGCAGGCTTTTTATCAAGCAATTAAGAACAAGATATCTCTTGCAGAGCTGTTTGATAGTAATCGTGGGCACCTCAATGAGAAGAGAATTCTGAATTTAATGAACATTGTTATTCAGCTAAGGAAGGTATGCAATCATCCAGATTTGTTTGAGAGAAGTGAGGGAAGTACATATCTTTACTTTGGAAGTATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGACGTATATTATTCTGGTGGTCACAACCCCATAATATATGAGATACCGAAACTTGTCTATCAAGAAATTTTGCAAAGTTCTGAAGCTCTCAGTTCAGCTGTTGGTCGTGGTGTCAGCAAAGAATCTTTTCAGAAACATTTTAATATTTTTACACCAGAAACTGTATATCGATCTGTTTTCTCAGATGATATGTACGTTAAAAGTGGAAACTTTGGTTTTACCCATTTGATGGATTTGTCTCCACAAGAGTTCACATTTCTGGCTACCGGTTCTTTTATGGAGCGATTACTATTTTCTATGATGAGGTGGGAACAAAATCTCCTCGATGAAGTAGTAGAATTTCTCACGGAGACCATAGACAATCCAGAATGTAGTTACCTTGAGCAAGGAAAAGTGAGAACTATCACTCGTATGTTATTGACGCCGCCGAGATCTGAGATGAAGTTGCTACAAAGAAAATTTTTAACTGGCCCTCGCTATGCTCCTTTTGAGGCCTTGGTTGTCTCACATCGGGATAGGCTTTTATCAAATGCAAGGCTTCTTCATTCTGCTTATACATATATCCCACGAAGTAGAGCTCCCCCAATTGGTGCTCACTGCCCTGATAGAAACTTCTACTATAAAATGACTGAAGAATTGCATGATCCTTGGGTTAAGAGGTTATTTGTTGGATTTGCACGTACATCTGACTGCAATGGGCCTAGAAAGCCAGATTGTCCTCATCGTTTAATTGAAGAGATAGATTCTAAACTACCTGTATCTCATCCTGCTCTTCAGTTGACGCACAGTATTTTTGGGTCCTCTCCACCTATGCGGAATTTTGACCCAGCAAAGTTGCTCACTGTACGTGTTGACTCTGGGAAGCTTCAAACACTTGATATATTATTGAAACGCTTACGGGCAGGAAACCATCGGGTTCTCTTATTTGCCCAGATGACTAAGATGCTAAATATTTTGGAGGACTATATGAACTACAGAAAATACAAGTATTTTAGACTTGATGGATCATCTACTATTCAGGATCGCAGAGACATGGTTAGAGACTTCCAGCATAGGTCTGATATTTTTGTGTTCTTACTGAGTACGAGAGCGGGTGGATTGGGTATCAACTTGACCGCGGCTGACACAGTCATATTTTACGAGAGTGATTGGAATCCAACATTGGATCTACAGGCAATGGACAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGATACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAGAAAAGCACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGTGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTTCAGTTACAGAAGAAATTAAAGGAAATTCCTCTCCAGGTAAAGGATAGGCAAAAGAAAAAACAACCTGCAAAGGGTATTCGGGTAAATGGAGATGGCGATGCTTCTCTAGAAGATCTAACTAACTCTGTACCCCAGGGTGCTGCAGATCTTGATCTTTCCATGGATCCAGAGGGGTCCAAGTCTAGTAATAATAATAAAAAGAGAAAAGGTGCCTCAGATAAGCAAACATCTAGGTCAAAGAATTCTCAAAAGATGAATGAACTCAGTAGTATCACGCCTATGGATGGCGAATTGGATGATACCCTCCTAACTGCCAATCCAGTAAGCCAGAAACCCAAGCGATCAAAGAGGGCATAG 4560 0.4178 MDHRTLFNLESLMNFRLPEQDDDFDYYGNSSQDESRDSQGRTDANCSNGNMHGKEVNFLKKRRWSQNSDDEEDSTFNMTEERYRSMLGEHVLQYKRRVKDVSSSPAQNEVSVPLLKSNAGLKARKSGSERRGGLHAAETTTEWMNDSNYKKAGNHRDADFVQRNGTDRTNYEPASLDIGDGIAYKIPPVYDKLAGMLNLPTFTDIHVEDSYLKGSLDLGSLAKMMASGKRFGNRNRAGMGETISQYESLQARLKFMSSSNLAHKFSLKVSDIDLDSCIPEGAAGSIKRSILSEGGVLQVYYVKVLEKGDSYEIIERSLPKKQKIKKDPALIEKEEMERIGKIWVNIVRRDIPKQHRNFTTFHRKQLIDAKRVSEICQREACPVKIKISRSLKWPRTAGMRTRKLARDMLLFWKRIDKEMRIGIYRIRNVCNRETEKVEVAHIVEKLYVKLLGDLEAEVKKREEKEAAEALRREQELREARRQQQRLNFLIQQTELYSHFMQNKSNLPPSEGLPMVDENTNDHDALVDSSNAGPNEEEDPEEAELKKEALKAAQEAVSKQRSLTNAFDTECLRLRQVDETDMLPPEVAGASNIDLQTPSTMPAASTVQTPELFKGCLKEYQLKGLQWLVNCYEQAFGILQGLNGILADEMGLGKTIQAMEKNIWGPFLVVAPASVLNNWNEELERFCPGLRRLPYWGGLSERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSANSIRWKTLLSFNCRNRLLLTGTPVQNNMAELWALLHFIMPTLFDSHEQFNEWFSRGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVVSELTSKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGHLNEKRILNLMNIVIQLRKVCNHPDLFERSEGSTYLYFGSIPNSLPPPPFGELEDVYYSGGHNPIIYEIPKLVYQEILQSSEALSSAVGRGVSKESFQKHFNIFTPETVYRSVFSDDMYVKSGNFGFTHLMDLSPQEFTFLATGSFMERLLFSMMRWEQNLLDEVVEFLTETIDNPECSYLEQGKVRTITRMLLTPPRSEMKLLQRKFLTGPRYAPFEALVVSHRDRLLSNARLLHSAYTYIPRSRAPPIGAHCPDRNFYYKMTEELHDPWVKRLFVGFARTSDCNGPRKPDCPHRLIEEIDSKLPVSHPALQLTHSIFGSSPPMRNFDPAKLLTVRVDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYFRLDGSSTIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKDTVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLQKKLKEIPLQVKDRQKKKQPAKGIRVNGDGDASLEDLTNSVPQGAADLDLSMDPEGSKSSNNNKKRKGASDKQTSRSKNSQKMNELSSITPMDGELDDTLLTANPVSQKPKRSKRA 1519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0275 1519 MobiDBLite consensus disorder prediction 121 172 - -
Lal20g0275 1519 Pfam SNF2-related domain 619 916 IPR000330 GO:0005524|GO:0140658
Lal20g0275 1519 MobiDBLite consensus disorder prediction 149 163 - -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 1477 1491 - -
Lal20g0275 1519 Gene3D - 1195 1425 IPR027417 -
Lal20g0275 1519 Pfam Helicase conserved C-terminal domain 1234 1343 IPR001650 -
Lal20g0275 1519 PANTHER CHROMATIN-REMODELING ATPASE INO80 7 1498 IPR031047 GO:0005634|GO:0006281|GO:0006338|GO:0006351|GO:0016887|GO:0031011
Lal20g0275 1519 PANTHER HELICASE SRCAP-RELATED 7 1498 - -
Lal20g0275 1519 CDD SF2_C_SNF 1219 1354 - -
Lal20g0275 1519 Coils Coil 459 492 - -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 31 52 - -
Lal20g0275 1519 SMART helicmild6 1260 1343 IPR001650 -
Lal20g0275 1519 SMART ultradead3 612 805 IPR014001 -
Lal20g0275 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1406 IPR027417 -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 1462 1476 - -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 1414 1519 - -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 23 52 - -
Lal20g0275 1519 ProSiteProfiles DBINO domain profile. 381 506 IPR020838 GO:0003677
Lal20g0275 1519 Pfam DNA-binding domain 337 421 IPR020838 GO:0003677
Lal20g0275 1519 Pfam DNA-binding domain 454 505 IPR020838 GO:0003677
Lal20g0275 1519 Gene3D - 589 866 IPR038718 -
Lal20g0275 1519 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 600 842 IPR027417 -
Lal20g0275 1519 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1234 1418 IPR001650 -
Lal20g0275 1519 MobiDBLite consensus disorder prediction 503 546 - -
Lal20g0275 1519 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 634 797 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0275 Lal-Chr20 2019639 2030942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0275 667 915 RAD5 or RAD16-like Gene Family AT1G61140 23.871 4.71e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal20g0275 SNF2_N 9.7e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0275 K11665 - gmx:100780615 2409.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0275 20 2019639 2030942 Lal20g0275 20 2019639 2030942 ECH
Lal1g1677 1 19203935 19215974 Lal20g0275 20 2019639 2030942 LSH