Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0269 ATGGCTTCTTCTTCTGATCCTGCCAAGTCCGAAATTGGTGGCGCTGCGGCGGAGACATCGGAAGCGGCGGCGATGGCGGTCGCGGTGATGAACGATCAGGCATTACTGTACAGAGGATTGAAGAAAGCGAAGAAGGAGAGAGGTTGTACTGCGAAAGAGAGAATCAGCAAAATGCCTCCTTGTGCCGCTGGAAAACGTAGCTCCATTTACCGTGGCGTTACCAGGCATAGATGGACTGGTCGTTATGAAGCACATCTTTGGGATAAAAGTACATGGAACCAAAATCAGAATAAAAAAGGAAAGCAAGTTTACTTGGGTAAGTTGGCAGTAGGTGCTCCCTTTTTTCTCCCTTTTTTCTCGCGTTATTTAAATGAAGTTGCTGTATCATTCGAATTAATGTCCGTTGCTGATGGCTTTTCAACAGGGGCATATGATGATGAGGAAGCAGCAGCTAGAGCATATGACCTTGCTGCTCTGAAATATTGGGGTCCAGGGACTCTCATTAATTTCCCTGTGACTGATTATACAAGAGATCTTGAAGAAATGCAGAATGTCTCAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGTGGCTTTTCAAGAGGAATATCAAAATACCGTGCACTCTCCAGTCGATGGGAGCCATCATATGGTCGCATTGCTGGATCTGATTTCTTCAATAATATGCATTATGGCGACGATTCAGTTGCAGAAAGTGAATATACAAGTGGTTTTTGCATAGAAAGGAAGATCGATTTAACAAGTCACATCAAGTGGTGGGGATCTAATAAAAGTCGACAACCTGATGCTGGAACAAGATTATCAGAAGAAAAGAAACATGGTTTTGCTGGAGATGTTTGCAGCGAACTTAAAATGTTGGAACAGAAAGTCCAACCGACTGAATCATACCAGATGCCAGAGTTAGGCAGGACCCACAATGAGAAAAAACATAGAAGTTCTTCAGTGTCTGCCTTAAGCATCTTGTCAGAATCTGCTGCTTATAAGAGCTTGCAAGAGAAAGCATCAAGGAGACCGGAAAATAGCACTGATAATGATGAGAATGAAAACAAAAACACAGTCAATAAGTTGGATCATGGCAAGGCAGTTGAGAAATCATCAAATCATGATGGTGGCAGTGATGGGCTTGACATTGCAATTGGAACAAGTGGGGCATTGTCTCTTCAAAGAAATATCTACCCACTGACTCCATTCTTGTCTGCACCGCTTTTGACAGCGTACAATACTGTTGATCCGTCATTGGTAGATCCTGTTCTATGGACTTCTCTTGTGCCCATGCTTTCTGCTGGCCTTTCTCGTCCTACTGAGGTTACAAAGACTGAGACCAGTTCATCGTATACGATCTTTCAGCCGGAGTAA 1383 0.4367 MASSSDPAKSEIGGAAAETSEAAAMAVAVMNDQALLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQVYLGKLAVGAPFFLPFFSRYLNEVAVSFELMSVADGFSTGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRALSSRWEPSYGRIAGSDFFNNMHYGDDSVAESEYTSGFCIERKIDLTSHIKWWGSNKSRQPDAGTRLSEEKKHGFAGDVCSELKMLEQKVQPTESYQMPELGRTHNEKKHRSSSVSALSILSESAAYKSLQEKASRRPENSTDNDENENKNTVNKLDHGKAVEKSSNHDGGSDGLDIAIGTSGALSLQRNIYPLTPFLSAPLLTAYNTVDPSLVDPVLWTSLVPMLSAGLSRPTEVTKTETSSSYTIFQPE 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0269 460 SUPERFAMILY DNA-binding domain 140 172 IPR016177 GO:0003677
Lal20g0269 460 ProSiteProfiles AP2/ERF domain profile. 69 171 IPR001471 GO:0003700|GO:0006355
Lal20g0269 460 PANTHER BNAA03G19580D PROTEIN 1 454 - -
Lal20g0269 460 SMART rav1_2 69 177 IPR001471 GO:0003700|GO:0006355
Lal20g0269 460 MobiDBLite consensus disorder prediction 338 382 - -
Lal20g0269 460 Gene3D AP2/ERF domain 134 173 IPR036955 GO:0003700|GO:0006355
Lal20g0269 460 Gene3D AP2/ERF domain 69 109 IPR036955 GO:0003700|GO:0006355
Lal20g0269 460 MobiDBLite consensus disorder prediction 299 324 - -
Lal20g0269 460 MobiDBLite consensus disorder prediction 339 379 - -
Lal20g0269 460 Pfam AP2 domain 69 107 IPR001471 GO:0003700|GO:0006355
Lal20g0269 460 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 454 - -
Lal20g0269 460 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Lal20g0269 460 PRINTS Ethylene responsive element binding protein signature 153 173 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0269 Lal-Chr20 1971138 1976157 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0269 32 459 AP2-EREBP Transcription Factor Family AT2G41710 57.466 1.60e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal20g0269 AP2 1.5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0269 K09285 - gmx:100814117 687.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0269 20 1971138 1976157 Lal20g0269 20 1971138 1976157 ECH