Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0268 ATGGCAACTGCTTCGAGTCAGTTGAAGATTATGCTTCGCAAAAATTTTCTCCTCAAAATTCGTCATCCTTTCGTTACTTCTGCTGAGATTTTGCTTCCTACGGTTGTGATGTTGCTGTTAATAGCTGTAAGGACGCAAGTGGATACTCAAATTCATCCAGCTCAACCGCACATTCAAAAGGACTTGTTTGTGGAAGTGGGGAAAGGTATATCCCCTAACGTCCAACAAGTTTTGGAGTCCTTATTGGAAAAGGGAGAGTGTTTAGCTTTTGCACCAGATACCATTGAGACAAAGCTGATGATAGATGTAATGTCAACAAAATTTCCGCTGTTGAAGCTTGTTAGTGTAGTATACAAAGACGAGGTTGAGTTGGAAACCTACATCCGTTCAGATGCTTATGGCACTTGCAATCAAGCAAGGAATTGTTCAAATCCGAAAATTAAAGGAGCTGTTGTATTTCATGAACAAGGTCCCCAGTCATTTGATTATAGCATACGCCTGAATCATACATGGGCTTTCTCCGGTTTTCCAGATGTTATGACAATAATGGATACAAATGGCCCTTTTCTTAATGACTTGGAGCTTGGTGTTAGTCCTGTACCAACAATGCAATACAGCTTCAGTGGGTTTTTCACTCTCCAGCAAATGGTCGATTCCTACATAATATTCATCTCTCAGCAGTCTGACTTAAACTCCAGTATCAAAAGCAAAGAGCTTCCTCTTCCAGGCTTTTATGACACCAATTTCTCTTTTAGAATTCCATGGACTCGCTTTAACCCTGCTCACATACGAATAGCTCCATTTCCCACTCGAGAGTATACAGATGATCAGTTCCAGTCAATCGTAAAGGAAGTCATGGGAATATTGTACTTACTGGGGTTTCTCTATCCAATTTCTCGCCTGATTAGTTATTCTGTGTTTGAGAAGTTTGCAATATCTTCCGGGATCATTACAGCTTGCACCATGAATAGTTTATTCAAGTATAGTGATAAGACGCTGGTGTTTGCATACTTCTTCACTTTTGGGCTTAGTGCAATCATGATGTCATTTTTTATATCCACGTTTTTCAAACGGGCCAAAACAGCTGTAGCTGTTGGAACTCTGTCTTTTCTTGGTGCCTTTTTCCCTTATTACACTGTCAATGATGAGGGAGTTTCTATGTTCTTGAAGGTTATTGCTTCTTTTCTTTCACCTGTAGCCTTTGCTCTGGGGTCAGTCAACTTTGCTGATTATGAGCGTGCTCATGTTGGACTTCGGTGGAGCAACATATGGCGTGAATCTTCAGGAGTGAACTTTTCGATATGTCTTCTGATGATGATACTTGATACACTTCTATATTGTGCAATTGGTCTATATTTTGATAAGGTTCTGCCTAGGGAGTATGGACTGCGATATCCATGGACCTTTCCTTTCCAAAAAGACTTTTGGAGGAATAAAAAAATTGTAAAACTTGGTTCCTCCAGTTTTGAAGTTAAAATTTCTGGTGATAATTCTGAGTCAAAAGGGAATCTCTTGGGGAAAGATACTTCCAGATCTGCTATAGAAGCAATAAGCATAGACATGAAACAACAGGAGCTTGATGGCAGGTGCATTCAAATAAGGAATTTGCATAAAGTATATGCTACTAAAAAAGGAGATTGTTGTGCTGTCAACTCATTACACCTTACATTGTATGAAAATCAGATTCTTGCTCTTCTGGGACATAATGGAGCTGGGAAAAGCACAACAATCTCAATGCTCGTTGGTCTTCTTCCTCCGACTTCAGGGGATGCTTTGGTGTTCGGAAAGAACATTGTATCAGATATTGATGAGATACGGAAGATTTTGGGTGTCTGCCCACAGCATGATATACTCTTTCCTGAATTGACTGTGAGAGAGCATTTAGAACTATTTGCCATATTAAAGGGTGTGGAAGAAGACTCATTGGAGGGTGTTGTTACTAGTATGGCTGATGAGGTAGGCCTGGCTGATAAAATCAATAGTGTTGTGAGAGCTCTTTCTGGTGGCATGAAGAGGAAATTGTCTCTTGGAATTGCATTGATAGGAAACAGTAAGGTTATAATCCTTGATGAACCTACTAGTGGAATGGATCCATACTCAATGCGCTTGACATGGCAGTTAATAAAAAAAATTAAGAAGGGAAGGATAATTCTACTAACAACACATTCTATGGATGAAGCAGATGAACTAGGTGACCGGATAGCTATCATGGCCAATGGTTCTATAAATTGCTGTGGAAGCTCTCTTTTCCTGAAGCATCATTATGGAGTTGGTTATACTTTAACTCTTGTGAAGTCAGCTCCTACTGCTTCTATAGCTGGTGATATAGTATACCGTCATGTTCCATCAGCGACCTGTGTAAGCGAGGTGGGAACTGAGATTTCCTTCAGGCTTCCTCTGGCGTCCTCGCCAGCCTTTGAGGGGATGTTTAGAGAAATTGAAGGTTGTATGAAAAAATCAGGTTCAAACCTGGGATTGAGTGGTAGTAGTGACAATGACAGTCTTGGTATAGAAAGCTATGGTATATCTGTCACTACCCTGGAGGAGGTATTCTTGAGAGTTGCAGGATGTGACTATAATGAAGCTGAATGTCTCGAGGAAAATAATCATTCTCTTCTATCAGACTCAGTGGCTTCTCTTGCTTCTTATGATCGTCCATCAAAAACAATATGTTATCCTGAAGTTTTTGGAAATTATAAGATCTTTGGTTTCTTAGCTTGCATGGTGGGAAGAGTTTGTGGTTTAATTTTTGCTATACTCATACGTTTCATCAACTTCTTGAGCATGCAGTGTTGTAACTGTGGTGTCATTACTAGGTCAACATTTTGGCAACATTCTAAAGCTTTATTTATTAAAAAGGCCATAACTGCTCGGAGAGATACCAAAACAATTATTTTCCAGCTAATGATTCCTGCTGTCTTCTTATTTTTTGGTCTTCTATTTCTCAAGCTCAAGCCACATCCTGATCAGCTGGGACTGACCCTATCAACTTCTTACTTTAATCCTCTTTTGAGCGGCGGGGGTGGGGGGTGTCCAATTCCTTTTAATCTATCTTTGCCAATTGCTGAAAAGGTTGCACAAAATGTTGAAGGAGGATGGATTCAAAGGTTCAAGCCAAGCTCATACAAATTCCCGAATTCAGAAATTGCATTAGCTGATGCAGTGGAAGCAGCAGGGCCAACCCTAGGACCTGCTCTAATTTCAATGAGTGAATATTTGATGTCTAGCTTTAATGAATCCTACCAATCTAGATATGGGGCCATTGTGATGGATGATCAGAATAATGATGGAAGCTTAGGCTACACTGTATTACACAACTTTTCTTGTCAACATGCTGCTCCAACCTTTATCAATTTGATGAATGCTGCAATTCTTAGGCTTGCTACTCATGACGTAAATATGACAATTCAGACACGCAACCACCCTCTACCAATGACACAAAGCCAGCGTCTACAAAGACATGATCTGGATGCCTTCTCTGCTGCAATTATTGTCAATATTGCATTCTCTTTTATTCCTGCTTCATTTTCTGTTTCCATTGTCAAGGAACGTGAAGTGAAAGCTAAGCACCAACAATTAATCAGCGGGGTTTCTGCCCTTTCGTATTGGACTTCTACATTTATCTGGGACTTTTTGAGCTTCCTGTTTCCCGCCACTTTTTCCATAGTTCTCTTTTACATATTTGGTCTGGATCAGTTTATTGGAGGGGTTTCTTTGTTACCAACAATCCTTATGCTTTTAGAGTATGGACTTGCAATTGCATCATCAACTTATTGCCTTACATTTTTCTTTTATGACCATACCATGGCTCAGAATGTGGTTCTCCTGGTCCACTTTTTCACTGGATTGATACTAATGGTTATCTCATTCATTATGGGACTCATACCATCCACAATAAGTGCAAATTCTCTTCTTAAGAATTTTTTCAGAATATCTCCTGGGTTTTGTTTTGCTGATGGTCTTGCTTCATTAGCTCTTCTGCGACAAGGAATGAAAGATAAAACAAGTGATGGGGTGTTTGATTGGAATGTTACTGGTGCTGCCATTTGTTATCTTGCTGTTGAGAGCTTTATTTACTTTTTGTTGACACTCGTGCTTGAAATTTTTCCTGCTATTACATTCACTCCATTCATGATCAAGAAGTGGTGGGAGAATATTAATATCTTCCAGCATAATACTACATATTTGGAACCTCTGCTAGAACCTTCCTCGGGAACTGTTGATAAGGACCTTGACGAAGATGTAGACGTGAAAACAGAAAGAAATAGAGTACTTTCAGGCTCTGTTAATAATTCCATTATCTACTTGCGTAATCTTCGGAAGGTGTATTCTGAAGAGAAGTATCATGAGAAGAAGGTTGCAGTAGATTCATTAACCTTCTCAGTTCAGGAAGGAGAATGTTTTGGCTTCTTAGGAACAAATGGAGCTGGAAAGACTACAACTCTTTCTATGCTATGTGGGGAAGAATCTCCTTCTGATGGGACTGCTTTTATTTTTGGCAAAGATATATGCTCCAATCCCAAGGCTGCTCGCCGATATATTGGGTATTGTCCACAATTTGATGCTCTATTGGAATATTTAACTGTCAAAGAGCATCTTGAGCTTTATGCTAGAATAAAAGGTGTTCCAGATTGCACAATAGAGAATGTTGTTATGGAAAAGTTGGTGGAGTTTGACTTAGTGAAGCACGCTAACAAACCATCTTTTTCACTTAGTGGAGGGAATAAAAGGAAACTGTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATTGTAATTCTTGATGAGCCATCCACAGGCATGGATCCCATTGCCAAAAGGTTCATGTGGGATGTAATATCTAGGATCTCAACAAGACGAGGAAAGACTGCAGTAATTCTTACTACTCACAGCATGAATGAAGCTCAAGCCTTATGTACCAGAATAGGGATAATGGTGGGTGGACGACTAAGATGCATTGGAAGCCCACAGCATTTGAAAACAAGATTTGGGAATCATCTTGAACTAGAGGTAAAACCTACTGAAGTGAGTTCTGTGGACTTACACGCGCTCTGCCAAGCTATTCAGGAAAGACTTTTTGATGTCCCTTCTCATCCTAGAACCTTACTTAATGACCTTGAAATTTGCATCGGGGGCACCGACTCTGTTACCTCAGCAGACACCTCTATTGCAGAGATTAGCTTGACACGAGAAATGATAGCCTTAATTGGGCTTTGGCTTGGCAACGAAGAAAGAACAAAGACATTAATCTCTTGTACACCTGTCTCTGATGGAGCTTCTCAGGAACAGTTATCAGAACAATTGTTTCGAGATGGTGGCATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCGAAGCAAAAATTCTCAGAAATTGATTCATTTATCCTCTCTTCATTTCGTGGAGCAAGATATCAAGGGTGCAATGGTTTGAGCATCAGATACCAGTTACCATATGATGAAGATTTGTCTCTGGCAGATGTTTTTGGAGTTCTTGAAGGGAACAGAAATAGATTAGGGATTGCAGAGTACAGCATTAGCCAGTCAACTTTGGAGACCATATTTAATCATTTTGCAGCTAAATCATGA 5589 0.3992 MATASSQLKIMLRKNFLLKIRHPFVTSAEILLPTVVMLLLIAVRTQVDTQIHPAQPHIQKDLFVEVGKGISPNVQQVLESLLEKGECLAFAPDTIETKLMIDVMSTKFPLLKLVSVVYKDEVELETYIRSDAYGTCNQARNCSNPKIKGAVVFHEQGPQSFDYSIRLNHTWAFSGFPDVMTIMDTNGPFLNDLELGVSPVPTMQYSFSGFFTLQQMVDSYIIFISQQSDLNSSIKSKELPLPGFYDTNFSFRIPWTRFNPAHIRIAPFPTREYTDDQFQSIVKEVMGILYLLGFLYPISRLISYSVFEKFAISSGIITACTMNSLFKYSDKTLVFAYFFTFGLSAIMMSFFISTFFKRAKTAVAVGTLSFLGAFFPYYTVNDEGVSMFLKVIASFLSPVAFALGSVNFADYERAHVGLRWSNIWRESSGVNFSICLLMMILDTLLYCAIGLYFDKVLPREYGLRYPWTFPFQKDFWRNKKIVKLGSSSFEVKISGDNSESKGNLLGKDTSRSAIEAISIDMKQQELDGRCIQIRNLHKVYATKKGDCCAVNSLHLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGKNIVSDIDEIRKILGVCPQHDILFPELTVREHLELFAILKGVEEDSLEGVVTSMADEVGLADKINSVVRALSGGMKRKLSLGIALIGNSKVIILDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSINCCGSSLFLKHHYGVGYTLTLVKSAPTASIAGDIVYRHVPSATCVSEVGTEISFRLPLASSPAFEGMFREIEGCMKKSGSNLGLSGSSDNDSLGIESYGISVTTLEEVFLRVAGCDYNEAECLEENNHSLLSDSVASLASYDRPSKTICYPEVFGNYKIFGFLACMVGRVCGLIFAILIRFINFLSMQCCNCGVITRSTFWQHSKALFIKKAITARRDTKTIIFQLMIPAVFLFFGLLFLKLKPHPDQLGLTLSTSYFNPLLSGGGGGCPIPFNLSLPIAEKVAQNVEGGWIQRFKPSSYKFPNSEIALADAVEAAGPTLGPALISMSEYLMSSFNESYQSRYGAIVMDDQNNDGSLGYTVLHNFSCQHAAPTFINLMNAAILRLATHDVNMTIQTRNHPLPMTQSQRLQRHDLDAFSAAIIVNIAFSFIPASFSVSIVKEREVKAKHQQLISGVSALSYWTSTFIWDFLSFLFPATFSIVLFYIFGLDQFIGGVSLLPTILMLLEYGLAIASSTYCLTFFFYDHTMAQNVVLLVHFFTGLILMVISFIMGLIPSTISANSLLKNFFRISPGFCFADGLASLALLRQGMKDKTSDGVFDWNVTGAAICYLAVESFIYFLLTLVLEIFPAITFTPFMIKKWWENINIFQHNTTYLEPLLEPSSGTVDKDLDEDVDVKTERNRVLSGSVNNSIIYLRNLRKVYSEEKYHEKKVAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSNPKAARRYIGYCPQFDALLEYLTVKEHLELYARIKGVPDCTIENVVMEKLVEFDLVKHANKPSFSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLHALCQAIQERLFDVPSHPRTLLNDLEICIGGTDSVTSADTSIAEISLTREMIALIGLWLGNEERTKTLISCTPVSDGASQEQLSEQLFRDGGIPLPVFSEWWLSKQKFSEIDSFILSSFRGARYQGCNGLSIRYQLPYDEDLSLADVFGVLEGNRNRLGIAEYSISQSTLETIFNHFAAKS 1862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0268 1862 Pfam ABC-2 family transporter protein 963 1364 - -
Lal20g0268 1862 SMART AAA_5 1464 1651 IPR003593 -
Lal20g0268 1862 SMART AAA_5 559 741 IPR003593 -
Lal20g0268 1862 Gene3D - 518 767 IPR027417 -
Lal20g0268 1862 Gene3D - 1423 1676 IPR027417 -
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1288 1631 - -
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 1623 1859 - -
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY A (ABC1), MEMBER 3B 6 1288 - -
Lal20g0268 1862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 531 764 IPR003439 GO:0005524
Lal20g0268 1862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1433 1663 IPR027417 -
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 6 1288 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1288 1631 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lal20g0268 1862 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1623 1859 IPR026082 GO:0016021|GO:0055085|GO:0140359
Lal20g0268 1862 CDD ABC_subfamily_A 531 752 - -
Lal20g0268 1862 ProSitePatterns ABC transporters family signature. 666 680 IPR017871 GO:0005524
Lal20g0268 1862 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1434 1672 IPR003439 GO:0005524
Lal20g0268 1862 CDD ABC_subfamily_A 1434 1660 - -
Lal20g0268 1862 Pfam ABC transporter 1456 1598 IPR003439 GO:0005524
Lal20g0268 1862 Pfam ABC transporter 551 694 IPR003439 GO:0005524
Lal20g0268 1862 ProSitePatterns ABC transporters family signature. 1571 1585 IPR017871 GO:0005524
Lal20g0268 1862 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 528 769 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0268 Lal-Chr20 1932114 1969097 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0268 531 767 Calmodulin-binding Proteins AT2G36910 25.714 6.08e-16 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0268 K05643 - gmx:100803263 3233.74