Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0257 ATGAAAATTTTATGCTTTTTGTTGCTGCTAGCTTGGTATGTGTCAATTTCTCAGCTTGTAGGTGCTGCTGAGCTTCAAGACCAAGCTATTTTACTTGCTATCAACCAAGAACTTAGAGTCCCTGGATGGGGTGATGCTAACACCTCACATTACTGCACTTGGCAAGGAATCACCTGTGGTAACCACTCAATGGTGGAGAAGATTGATCTAGCTCATCGGAATCTTCGAGGTAATGTAACTTTAATGTCTGAGCTCAAAGCTTTGAAGCAGCTTGACCTTTCAAACAATAACTTTGATGGTTTGATTCCTACTGCTTTTGGAAATTTATCTCATCTTGAAGTTCTAGATTTGTCTTCAAATAAGTTTAGAGGGTCAATTCCACAACAATTGGGTGTCCTTAGAAGCCTCAAGTCATTAAATCTTTCCAATAATGTCCTTGTGGGAGAGATACCAATGGAACTTCAAGGCCTAGAGGAATTGCAGGATTTTCAAATTTCTAGTAATCATTTGAGTGGTGTGATACCTTCTTGGGTGGGAAACTTGACCAATTTGAGACTTTTTACTGCTTATGAGAATAGCTTAGGCGGTAGGATTCCAGATAGTCTCGGCATGATTTCTGAGCTTCGAATACTTAACCTGCATTCTAACCAGCTTGAAGGTCCAATACCAGCAAGCGTTTTTGCTCCAGGGAAGTTGGAAATTCTGGTTCTCACCCAGAATAATTTTAGTGGTGTTCTTCCTGATGAAATTGGGAATTGCCGAGCCCTTTCCAATGTTCGAATTGGCAATAATTATATAGTAGGTAGTATTCCTAAGACGATTGGAAATCTTAGTGGCCTAACCTACTTTGAAGCCGACAATAACAACCTTTCTGGTGAGATAGTGTCAGAATTTTCTCGGTGTTCTAACCTGACTCTCTTGAATTTAGCTGAAAATGGATTTACTGGTATAATTCCACCAGAATTTGGAAAGCTCATGAACCTGCAGGAGTTGATCCTTTCTGGAAATAGTCTCTTCGGTGATATTCCAAAGTCAATTCTGAGCTGCAAAAATCTTAACAAGCTTGATATTAGCAACAACAGATTCAATGGTACAATACCAAATGAAATTTGCAGTGTCACTCGGTTGCAGTACTTGCTATTGGATCAAAATTCCATGAGAGGAGAGATCCCTCATGAAATTGGAAGTTGTGCAAAACTTCTTGAATTACAATTGGGCAGTAATTATTTGTCTGGAACTATCCCTCCCGAGATTGGCCATATCAGGAACTTACAGATAGCTTTAAATTTGAGCTTCAATCATCTTCATGGGCCATTGCCTCCCGAATTAGGAAGACTGGATAAACTTGTTTCTCTTGATGTCTCAAACAACCGGCTCTCAGGTAATATCCCAGATGAGCTTAAGGGAATGTTGAGCTTGATTGAGGTTAACTTCTCAAATAATCTCTTTGGAGGTCCTGTACCAACATTTGTACCATTCCAGAAGTGTCCTAGTTCCAGTTTTTTGGGCAACAAGGGGCTTTGTGGAGAGCCATTGAACTCTTCATGTGGTGATCTTTATGACGAACACAAGAATTACCATCACAGGGTTTCTTATAGAATCATACTGGCTGTTATTGGTTCTGGTTTGGCAGTTTTTATGTCAGTGACTGTAGTCGTCTTGCTGTTTATGATCAGAGAAAGGCAAGAAAAAGTAGCCAAAGAGGCCGACAAAATTGTTGATGATAGAGCCAATGACAACCCAACTGTAATAGCAGGGAGTGTTTTTGTTGATAATCTAAGACAAGCAATAGACCTTGATGCTGTTGTTAAAGCAACTCTTAAAGACTCTAATAAAGTCAGCAGCGGAACTTTCAGCACAGTTTATAAAGCAGTCATGCCTTCTGGGATGGTCTTATCTGTAAGGAGATTGAAGTCCATAGACAAGACAATAATCCAGCACCAGAACAAGATGATTAGAGAGCTTGAAAGGCTGGGAAAAGTCTCTCATGCTAATATAGTACAACCCATTGGCTATGTTATTTATGAAGATGTTGCTCTTCTCTTGCATCATTACTTTCCTGATGGAACATTGGCTCAGCTTCTTCATGAATCTACCAGACAACTTGATTATCAGCCTAACTGGCCTGAGAGGCTATCCGTTGCCATTGGATTGGCTGAAGGTTTGGCTTTCCTTCATCATGTGGCGATTATCCATCTCGACATTTCTTCTGGCAATGTTCTTTTGGATGCAAATTCTAAGCCGCTGCTTGGGGAGATCGAGATTTCAAAACTTCTTGATCCATCCAAAGGTACTGGAAGCATTAGTGCAGTTGCTGGTTCCTTTGGTTACATACCACCAGAATATGCATATACGATGCAAGTTACAGCGCCAGGAAATGTTTATAGTTATGGTGTTGTTCTTTTGGAAATCCTTACAACTCGTCAACCAGTTGATGAAGAATTTGGTGAAGGTGTAGATTTGGTGAAGTGGGTTCATAGTGCTCCAGTAAGAGGTGAAACTCCAGAGCAGATACTTGATGCAAGGCTTAGCACAGTTTCATTTGGTTGGAGGAAGGACATGCTTGCTGCTCTTAAGGTTGCATTGCTATGCACCGACAACACACCTGCCAAACGACCAAAAATGAAGAATGTCGTAGAAATGCTTCAAGAGATAAAGCAAAACTGA 2667 0.4049 MKILCFLLLLAWYVSISQLVGAAELQDQAILLAINQELRVPGWGDANTSHYCTWQGITCGNHSMVEKIDLAHRNLRGNVTLMSELKALKQLDLSNNNFDGLIPTAFGNLSHLEVLDLSSNKFRGSIPQQLGVLRSLKSLNLSNNVLVGEIPMELQGLEELQDFQISSNHLSGVIPSWVGNLTNLRLFTAYENSLGGRIPDSLGMISELRILNLHSNQLEGPIPASVFAPGKLEILVLTQNNFSGVLPDEIGNCRALSNVRIGNNYIVGSIPKTIGNLSGLTYFEADNNNLSGEIVSEFSRCSNLTLLNLAENGFTGIIPPEFGKLMNLQELILSGNSLFGDIPKSILSCKNLNKLDISNNRFNGTIPNEICSVTRLQYLLLDQNSMRGEIPHEIGSCAKLLELQLGSNYLSGTIPPEIGHIRNLQIALNLSFNHLHGPLPPELGRLDKLVSLDVSNNRLSGNIPDELKGMLSLIEVNFSNNLFGGPVPTFVPFQKCPSSSFLGNKGLCGEPLNSSCGDLYDEHKNYHHRVSYRIILAVIGSGLAVFMSVTVVVLLFMIRERQEKVAKEADKIVDDRANDNPTVIAGSVFVDNLRQAIDLDAVVKATLKDSNKVSSGTFSTVYKAVMPSGMVLSVRRLKSIDKTIIQHQNKMIRELERLGKVSHANIVQPIGYVIYEDVALLLHHYFPDGTLAQLLHESTRQLDYQPNWPERLSVAIGLAEGLAFLHHVAIIHLDISSGNVLLDANSKPLLGEIEISKLLDPSKGTGSISAVAGSFGYIPPEYAYTMQVTAPGNVYSYGVVLLEILTTRQPVDEEFGEGVDLVKWVHSAPVRGETPEQILDARLSTVSFGWRKDMLAALKVALLCTDNTPAKRPKMKNVVEMLQEIKQN 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0257 888 SUPERFAMILY Protein kinase-like (PK-like) 607 885 IPR011009 -
Lal20g0257 888 SUPERFAMILY L domain-like 48 292 - -
Lal20g0257 888 Gene3D Ribonuclease Inhibitor 26 134 IPR032675 -
Lal20g0257 888 Pfam Protein tyrosine and serine/threonine kinase 610 882 IPR001245 GO:0004672|GO:0006468
Lal20g0257 888 ProSiteProfiles Protein kinase domain profile. 607 888 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0257 888 Gene3D Ribonuclease Inhibitor 152 228 IPR032675 -
Lal20g0257 888 Gene3D Phosphorylase Kinase; domain 1 573 685 - -
Lal20g0257 888 Gene3D Transferase(Phosphotransferase) domain 1 686 888 - -
Lal20g0257 888 SMART LRR_typ_2 85 108 IPR003591 -
Lal20g0257 888 SMART LRR_typ_2 109 133 IPR003591 -
Lal20g0257 888 SMART LRR_typ_2 205 229 IPR003591 -
Lal20g0257 888 SMART LRR_typ_2 373 397 IPR003591 -
Lal20g0257 888 SMART LRR_typ_2 446 469 IPR003591 -
Lal20g0257 888 SMART LRR_typ_2 325 349 IPR003591 -
Lal20g0257 888 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 886 - -
Lal20g0257 888 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE TYROSINE-PROTEIN KINASE PXC3 5 886 - -
Lal20g0257 888 Gene3D Ribonuclease Inhibitor 229 518 IPR032675 -
Lal20g0257 888 PRINTS Leucine-rich repeat signature 88 101 - -
Lal20g0257 888 PRINTS Leucine-rich repeat signature 109 122 - -
Lal20g0257 888 SUPERFAMILY L domain-like 253 512 - -
Lal20g0257 888 Pfam Leucine rich repeat 87 146 IPR001611 GO:0005515
Lal20g0257 888 Pfam Leucine rich repeat 327 385 IPR001611 GO:0005515
Lal20g0257 888 ProSitePatterns Tyrosine protein kinases specific active-site signature. 730 742 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0257 Lal-Chr20 1856935 1861086 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0257 1 887 Receptor kinase-like Gene Family AT2G41820 71.011 0.0 1276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lal20g0257 PK_Tyr_Ser-Thr 1.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0257 - - gmx:100789684 1536.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0257 20 1856935 1861086 Lal20g0257 20 1856935 1861086 ECH