Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0255 ATGGGGACTCCTGAATTTCCAGAATTAGGGAAACATTGTTCTCTTCCTCATTGCAAACTCATTGATTTCTTACCCTTCACTTGCGATCGCTGCAATCAAGTATATTGTTTGGACCACCGAAGTTATACCAATCATCAGTGTACAATATCCAACAAAAATGATGTCACTGTTGTTATATGTCCTCTTTGTGGCAAAAGTGTTCGCCTAATTCCAGATCAAGATCCAAACATAACTTGGGAGCATCATGTTAACACTGACTGTGATCCATCGAATTTCGAGAAAGTCACAAAGAAGAAAAGATGCCCTGCCACAGGATGCAAAGAGATCCTAGTATTCTCAAACACGATCAAGTGCAGGGACTGCATGGTAGACCATTGTCTGAAGCACCGTTTTGGACCTGATCACAAATGCCCTGGACCCAAAAAGTCAGAGTCGAGCTTTTCTTTTACCAATCCTTTTAATAGAAGTGTGAATGAGAAGTCAAAACCCAATTCGACCTCAACCGCATCTTCTAAATGGACTTCAAGTCTTCTTAACATGGCTTCTAGTATTCGAGCTTCAGCAGAACAAGTCTGGCAGACAACAAAGGATGGGGTGGGACAGAGCAGCAGCAGTGGAAATAGAAACGATCAATTGGAGCAGTGCCCTCAGTGTGGTGCAAAGTTTTCGTCGGTTACGACTTTGGTGGATCATGTGCAGAAGGTTCATGAAAGGAATGGAAACCAATCTAAGGTAAAGAAGGTGGATGTTGCAGCATGTCCTAAGTGTAGTAGAGGATTTGTCGACCCGGTGGCCCTTGTTGAGCACGTTGAAAGGGATCACGGTGGTAGTTCTAGATAG 840 0.4345 MGTPEFPELGKHCSLPHCKLIDFLPFTCDRCNQVYCLDHRSYTNHQCTISNKNDVTVVICPLCGKSVRLIPDQDPNITWEHHVNTDCDPSNFEKVTKKKRCPATGCKEILVFSNTIKCRDCMVDHCLKHRFGPDHKCPGPKKSESSFSFTNPFNRSVNEKSKPNSTSTASSKWTSSLLNMASSIRASAEQVWQTTKDGVGQSSSSGNRNDQLEQCPQCGAKFSSVTTLVDHVQKVHERNGNQSKVKKVDVAACPKCSRGFVDPVALVEHVERDHGGSSR 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0255 279 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lal20g0255 279 PANTHER ZINC FINGER AN1 AND C2H2 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 13 1 279 - -
Lal20g0255 279 SMART c2h2final6 213 236 IPR013087 -
Lal20g0255 279 SMART c2h2final6 251 274 IPR013087 -
Lal20g0255 279 Gene3D - 2 57 IPR035896 -
Lal20g0255 279 Gene3D - 86 170 IPR035896 -
Lal20g0255 279 Pfam C2H2-type zinc finger 214 236 - -
Lal20g0255 279 MobiDBLite consensus disorder prediction 148 172 - -
Lal20g0255 279 ProSitePatterns Zinc finger C2H2 type domain signature. 215 236 IPR013087 -
Lal20g0255 279 SUPERFAMILY AN1-like Zinc finger 58 152 IPR035896 -
Lal20g0255 279 MobiDBLite consensus disorder prediction 192 211 - -
Lal20g0255 279 Pfam AN1-like Zinc finger 13 49 IPR000058 GO:0008270
Lal20g0255 279 Pfam AN1-like Zinc finger 101 141 IPR000058 GO:0008270
Lal20g0255 279 Gene3D Classic Zinc Finger 181 278 - -
Lal20g0255 279 SUPERFAMILY AN1-like Zinc finger 6 50 IPR035896 -
Lal20g0255 279 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lal20g0255 279 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lal20g0255 279 ProSitePatterns Zinc finger C2H2 type domain signature. 253 274 IPR013087 -
Lal20g0255 279 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lal20g0255 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 213 241 IPR013087 -
Lal20g0255 279 ProSiteProfiles Zinc finger C2H2 type domain profile. 251 279 IPR013087 -
Lal20g0255 279 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 1 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0255 Lal-Chr20 1829891 1831889 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0255 1 279 C2H2 Transcription Factor Family AT2G41835 58.781 4.60e-111 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal20g0255 zf-AN1 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0255 - - gmx:100806459 464.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0255 20 1829891 1831889 Lal20g0255 20 1829891 1831889 ECH