Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0254 ATGGGTAATTGTTGTGCAACACCACAAGTTCCACCAGGGGAAACGAAAAAGAAGAATAAGAATAAGAAAGAGAACCCTTTCGCGATCGATTATGGAAACGGCACCGTTTCAACAGGAACAAAACTCACCGTTTTGAGCAACCCAACGGGTGAAGAGATCGAACTCCGTTATGAACTGGGTCGAGAACTGGGTCGGGGTGAGTTTGGTATAACGTATCTTTGCACTGATAAGGAATCGAGTGAAGAGTTTGCGTGTAAATCGATTTCAAAGAATAAACTGAGAACTGCTATTGATATTGAAGATGTGAGAAGAGAGGTTGAAATCATGAGGCACTTACCTAAGCATCCTAACATTGTTACTTTGAAGGATACTTATGAGGATAGTAATGCTGTTCACCTTGTTATGGAGCTTTGTGAGGGTGGTGAGCTCTTTGATCGGATCGTTGCTCGCGGCCACTATACTGAACGTGCCGCCGCCGCTGTCACCAAGACCATTGTTGAAGTTGTGCAGATGTGCCACAAACATGGTGTGATGCATCGGGATCTCAAACCTGAGAACTTTTTGTTTGCAAATAAGAAGGAAACGGCAGCTCTGAAGGCTATTGATTTTGGATTGTCAGTGTTCTTTAAACCTGGGGAAAGATTTAATGAGATTGTTGGAAGTCCATATTACATGGCTCCAGAGGTATTAAAACGAAACTATGGCCCGGAAGTTGATATCTGGAGTGCTGGAGTAATTCTATACATATTACTCTGTGGTGTCCCACCCTTTTGGGCAGAAACTGAACAAGGAGTTGCACAAGCAATTATACGATCTGTTGTTGATTTTAAAAGGGACCCTTGGCCAAAAGTTTCTGATCATGCAAAAGACCTTGTGAAGAAGATGCTTGATCCTGATCCAAAGCGGCGGCTTACTGCACATGAAGTGTTAGAGCATCCGTGGATAATAAATGCAAAGAAAGCTCCTAATGTTTCATTAGGGGAAACTGTTAAAGCAAGGCTGAAGCAATTTTCTGTAATGAACAAGCTTAAGAAAAGAGCTCTGAGGGTGATTGCCGAGCATTTGTCAGTTGAAGAAGCTGCTGGAATAAAAGAAGGATTCCAGGTTATGGATACAGGCAACAGAGGCAAGATTAACATGGATGAACTACGAGTAGGATTGCATAAACTTGGCCATCAAGTTCTTGATGAAGATATCAAAATTCTTATGGAAGCTGGGGATGTAGATAATGATGGGTACCTAGATTACAGAGAGTTTGTAGCCATTTCTGTTCATCTGAGAAAGATAGGAAATGACGAACACCTTCACAGAGCTTTCCAATATTTTGATGCGAACCAAAGTGGTTATATTGAAATTGAGGAGTTGCGTAAAGCCTTATCTAGTGAGGTTGAGACAGACAGTGAAGATGTCGTTAATGCAATTATGCATGACGTGGACACAGACAAGGATGGTAAAATAAGTTATGATGAATTTGCTACAATGATGAAGGCTGGCACAGATTGGAGAAAAGCATCAAGGCAGTATTCACGTGAAAGGTTTAACAATCTCAGCCTTAAATTATTCAAGGATGGTTCATTACAACTAAACAATGAAAACCAATGA 1602 0.412 MGNCCATPQVPPGETKKKNKNKKENPFAIDYGNGTVSTGTKLTVLSNPTGEEIELRYELGRELGRGEFGITYLCTDKESSEEFACKSISKNKLRTAIDIEDVRREVEIMRHLPKHPNIVTLKDTYEDSNAVHLVMELCEGGELFDRIVARGHYTERAAAAVTKTIVEVVQMCHKHGVMHRDLKPENFLFANKKETAALKAIDFGLSVFFKPGERFNEIVGSPYYMAPEVLKRNYGPEVDIWSAGVILYILLCGVPPFWAETEQGVAQAIIRSVVDFKRDPWPKVSDHAKDLVKKMLDPDPKRRLTAHEVLEHPWIINAKKAPNVSLGETVKARLKQFSVMNKLKKRALRVIAEHLSVEEAAGIKEGFQVMDTGNRGKINMDELRVGLHKLGHQVLDEDIKILMEAGDVDNDGYLDYREFVAISVHLRKIGNDEHLHRAFQYFDANQSGYIEIEELRKALSSEVETDSEDVVNAIMHDVDTDKDGKISYDEFATMMKAGTDWRKASRQYSRERFNNLSLKLFKDGSLQLNNENQ 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0254 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 177 189 IPR008271 GO:0004672|GO:0006468
Lal20g0254 533 ProSitePatterns Protein kinases ATP-binding region signature. 63 86 IPR017441 GO:0005524
Lal20g0254 533 CDD EFh 434 496 IPR002048 GO:0005509
Lal20g0254 533 Gene3D - 324 498 - -
Lal20g0254 533 Gene3D Transferase(Phosphotransferase) domain 1 143 323 - -
Lal20g0254 533 SMART efh_1 434 462 IPR002048 GO:0005509
Lal20g0254 533 SMART efh_1 398 426 IPR002048 GO:0005509
Lal20g0254 533 SMART efh_1 362 390 IPR002048 GO:0005509
Lal20g0254 533 SMART efh_1 470 498 IPR002048 GO:0005509
Lal20g0254 533 ProSitePatterns EF-hand calcium-binding domain. 407 419 IPR018247 -
Lal20g0254 533 ProSitePatterns EF-hand calcium-binding domain. 443 455 IPR018247 -
Lal20g0254 533 ProSiteProfiles EF-hand calcium-binding domain profile. 430 465 IPR002048 GO:0005509
Lal20g0254 533 SMART serkin_6 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0254 533 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 512 - -
Lal20g0254 533 SUPERFAMILY EF-hand 339 508 IPR011992 -
Lal20g0254 533 ProSiteProfiles EF-hand calcium-binding domain profile. 466 501 IPR002048 GO:0005509
Lal20g0254 533 ProSiteProfiles Protein kinase domain profile. 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0254 533 ProSitePatterns EF-hand calcium-binding domain. 479 491 IPR018247 -
Lal20g0254 533 Gene3D Phosphorylase Kinase; domain 1 59 142 - -
Lal20g0254 533 ProSiteProfiles EF-hand calcium-binding domain profile. 358 393 IPR002048 GO:0005509
Lal20g0254 533 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 32-LIKE 13 512 - -
Lal20g0254 533 Pfam EF-hand domain pair 433 496 IPR002048 GO:0005509
Lal20g0254 533 Pfam Protein kinase domain 57 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0254 533 ProSiteProfiles EF-hand calcium-binding domain profile. 394 429 IPR002048 GO:0005509
Lal20g0254 533 CDD STKc_CAMK 56 314 - -
Lal20g0254 533 MobiDBLite consensus disorder prediction 1 24 - -
Lal20g0254 533 Pfam EF-hand domain pair 375 424 IPR002048 GO:0005509
Lal20g0254 533 SUPERFAMILY Protein kinase-like (PK-like) 56 322 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0254 Lal-Chr20 1824480 1828761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0254 1 532 EF-hand Containing Proteins AT5G19450 78.090 0.0 874
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal20g0254 Pkinase 1.2e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0254 K13412 - gmx:100808399 913.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0254 20 1824480 1828761 Lal20g0254 20 1824480 1828761 ECH
Lal11g1332 11 16926597 16930720 Lal20g0254 20 1824480 1828761 LSH
Lal1g1695 1 19383361 19388620 Lal20g0254 20 1824480 1828761 LSH
Lal20g0254 20 1824480 1828761 Lal13g1519 13 14917876 14924831 PCT
Lal13g1519 13 14917876 14924831 Lal20g0254 20 1824480 1828761 PCT