Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0250 ATGAATCACTTGACTATTGATACTGGAGATTCCTTTGCAAGCTTGCTTGAGCTTGCGGCCAATAACGATGTTGAAGGTTTCAAACGATTGATTGAGTGTGATCCTTCCTCAGTAGATGAGGTTGGACTGTGGTATGGTCGTCGAAAGGGATCAAAACAGATGGTCAATGAACACAGAACTCCTTTGATGGTTGCTGCTACTTATGGGAGTATTGACATTATGAAGATGATTCTTTCACTATCTGATGCAGACATTAACCGCTCTTGTGGACTTGAAAAGAGCACTGCCCTTCATTGTGCAGCATCCGGTGGGGCTGAAGATGCTGTTGGTGCTGTGAAACTGCTTCTGGCAGAAGGCGCTGATCCAAATTCGGTGGATGCCAATGGACATCGTCCGGTGGATGTTATTGTTTTCCCTCCCAAGCTTGAGTGTGTTAAAAACAGTCTTGAACAACTTCTTCAAACTGATGATTCTATTGCTGGTTGCAATCTTAGGGTGATTACAGCCTCCTCATTCAATTCATATTCTCCACCATTATCAAATTCACCAGAGAATGGATCTCCTTCTGCACCAGATTTCCAATTGAAGATGAAGCCAAAAGATGTGCCTGTTTCTTCTGCATCTGAGAAGAAAGAATATCCTATTGATCCTTCTCTTCCTGATATCAAGAACAGCATATACTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCCGGCCTTGTTCTCGTGCTTATTCACATGATTGGACTGAATGCCCTTTTGTCCATCCAGGAGAGAATGCTCGTAGAAGGGACCCAAGAAAATACCATTACAGCTGCGTACCTTGTCCTGATTTTCGCAAGGGTGCTTGCAGGCGCGGGGACATGTGTGAATATGCTCATGGTGTTTTTGAGTGCTGGTTGCATCCTGCACAATATCGTACTCGTCTTTGCAAGGATGGGATAAATTGCTCCAGAAGAGTGTGTTTCTTTGCGCACACCGCTGAAGAGCTTCGACCATTATATGTTTCAACTGGTTCTGCTGTCCTCTCGCCTCATGCGAGCACATCCTCTGCCATGGACTTTGCTGCTGCCTTGAGCATGTTGCCAGGCTCCCCATCTTCAATGTCCATCATGTCGCCTTCGCCATTCACTCCACCCATGTCACCTTCTGCTAATGGCATGCACTCTTCTGTTCCATGGCCTCAGCCGAATGTCCCAGCCTTGCATCTTCCGGGAAGTAATCTTCAGTCCAGTCGTTTGAGATCTTCACTCCATGCTAGAGATATTCCTATGGATGACTTCGACTTGTTCTCTGATTATGATCAGCAACTTCTTCTTAATGAGTTATCTTGCCTATCTCCACAGCATCCTATGAATTCTAATAATCTGAACCGCTCAGGTCGGATGAAACCCCTGACTCCTTCAAATCTCGATGACCTCTTTTCTGCTGAGAGTTCTTCTCCTCGATATGCTGATGGATCACTGGCTTCAACTGTTTTCTCTCCAACTCACAAATCAGCTGTCTTTAATCAATTTCAGCAGCAACAAAGCATGTTGTCACCTGTGAATACTAATTTTTCTCCTAAAAATGTTGAGCATCCTTTGTTGCAGGCTTCCTCTTTCGGGGCTCAGTCATCAGGAAGAATGTCCCCGCGAAACATGGAACCTATTTCTCCAATGAACTCTAGGATGTCTATGCTAGCACAGCGTGAGAAGCAGCAACAATTTCGCAGCCTTAGCTCTCGGGAACTAGGCTCCAACTCTGCTGCTGCTGCCGCTGCTGCCTCAGCCAACTCTTGGTCTCGATGGGGATCCCCAAATGGTAAGGCGGATTGGGCAACTGGTATAGAGGAATTCAATAAGCACCGGAGGTCATCTTCATTTGAGCTAGGGAACAACGGCGAGGAGCCGGATTTATCATGGGTGCAGTCACTTGTCAAAGAATCTCCAACCGAGATTAAAGAGAAGTTGGCTACTAATGTCTCAAATGTTGAAGCAGCTGAATCCTCCGGTGAGGGATCAAACATAAACACATCACAAAAGGAGTCTGTTGATCATGCTGTATTGGGAGCTTGGCTCGAACAAATGCAGCTTGATCATCTCGTGGCTCAGCAAAACTGA 2106 0.4568 MNHLTIDTGDSFASLLELAANNDVEGFKRLIECDPSSVDEVGLWYGRRKGSKQMVNEHRTPLMVAATYGSIDIMKMILSLSDADINRSCGLEKSTALHCAASGGAEDAVGAVKLLLAEGADPNSVDANGHRPVDVIVFPPKLECVKNSLEQLLQTDDSIAGCNLRVITASSFNSYSPPLSNSPENGSPSAPDFQLKMKPKDVPVSSASEKKEYPIDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGINCSRRVCFFAHTAEELRPLYVSTGSAVLSPHASTSSAMDFAAALSMLPGSPSSMSIMSPSPFTPPMSPSANGMHSSVPWPQPNVPALHLPGSNLQSSRLRSSLHARDIPMDDFDLFSDYDQQLLLNELSCLSPQHPMNSNNLNRSGRMKPLTPSNLDDLFSAESSSPRYADGSLASTVFSPTHKSAVFNQFQQQQSMLSPVNTNFSPKNVEHPLLQASSFGAQSSGRMSPRNMEPISPMNSRMSMLAQREKQQQFRSLSSRELGSNSAAAAAAASANSWSRWGSPNGKADWATGIEEFNKHRRSSSFELGNNGEEPDLSWVQSLVKESPTEIKEKLATNVSNVEAAESSGEGSNINTSQKESVDHAVLGAWLEQMQLDHLVAQQN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0250 701 MobiDBLite consensus disorder prediction 535 554 - -
Lal20g0250 701 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lal20g0250 701 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lal20g0250 701 Gene3D - 272 334 - -
Lal20g0250 701 SUPERFAMILY Ankyrin repeat 16 146 IPR036770 -
Lal20g0250 701 SMART ANK_2a 10 40 IPR002110 GO:0005515
Lal20g0250 701 SMART ANK_2a 92 124 IPR002110 GO:0005515
Lal20g0250 701 SMART ANK_2a 57 87 IPR002110 GO:0005515
Lal20g0250 701 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
Lal20g0250 701 Pfam Ankyrin repeats (3 copies) 18 126 IPR002110 GO:0005515
Lal20g0250 701 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 698 - -
Lal20g0250 701 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lal20g0250 701 Gene3D - 7 157 IPR036770 -
Lal20g0250 701 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Lal20g0250 701 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Lal20g0250 701 PANTHER UNKEMPT FAMILY MEMBER 1 698 IPR045234 -
Lal20g0250 701 MobiDBLite consensus disorder prediction 177 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0250 Lal-Chr20 1775842 1777947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0250 11 694 C2H2 Transcription Factor Family AT5G12850 53.067 0.0 667
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal20g0250 Ank_2 1.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0250 - - ccaj:109796653 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0250 20 1775842 1777947 Lal20g0250 20 1775842 1777947 ECH