Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0246 ATGGCTGATCCCTACTCTTCTTCACCTTTCTTTCATTTCAACCATTTCTCTTCTTCTTCTCCAAACCCTTCTCAACATCATCATCATCCATATCTCCATAACTTCATCAATCCAACAAAAAATGACACCACCACCACTACCACCACCACCACCACCTTTTTCCACTTCCACCACCACCAAACTCAAACTAGTAACCCTCCTTCACCTCCTCTTAGAGAAGAACTTCCTCTCTTAACTCTTAGCCCAGCAAAGAAAAAAGAGAATAACAATATTCTTAATGATCAACAAGACCAGCAAGAGGAGGAGAACCATCTCTCTTGCACTGCCATGGATGTGGAAGAGAGGATCTACCTTTACAAACAGGAACAACAACAACAAGAAGAAGAAGATGATGATGATACCACTGTCACTGTTGCACTCCACATAGGTTTACCAAGCCCTAGTGCTTCTGAGATGGCAACTATGCTTTCCTCTAATAATTCTTCTTCTTCAGAGATCAATGATAAAGATCATGGTAGTGAGGATTCTTCTATGTTCATGCTTAACAATAGGCTCAACAAGGGACAGTACTGGATCCCTACCCCTTCTCAAATTCTCATTGGTCCTACTCAGTTCTCTTGTCCTGTTTGCTACAAAAGTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAGTACAGAAAAGGGCCTGAATCTCTAAGGGGTACCCAACCAACAGGAATGCTAAGGCTTCCATGTTATTGTTGTGCACCAGGGTGCAGAAACAACATTGATCACCCAAGAGCAAAGCCACTCAAAGACTTTAGAACACTCCAAACACATTACAAGAGGAAGCATGGGATTAAACCCTTCATGTGTAGAAAATGTGGCAAAGCCTTTGCTGTGAGGGGAGATTGGAGAACACATGAAAAGAATTGTGGGAAGCTTTGGTATTGTATCTGTGGCTCTGATTTCAAACACAAAAGGTCACTTAAAGATCACATAAAAGCTTTTGGAAGTGGCCATGCAGCTTATGGGATTGATGGCTTTGAAGAAGAAGATGAACCAGCTTCTGAAGTAGAGCAAGATAATGATTACTATACCACCCAGTAA 1107 0.4173 MADPYSSSPFFHFNHFSSSSPNPSQHHHHPYLHNFINPTKNDTTTTTTTTTTFFHFHHHQTQTSNPPSPPLREELPLLTLSPAKKKENNNILNDQQDQQEEENHLSCTAMDVEERIYLYKQEQQQQEEEDDDDTTVTVALHIGLPSPSASEMATMLSSNNSSSSEINDKDHGSEDSSMFMLNNRLNKGQYWIPTPSQILIGPTQFSCPVCYKSFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGSGHAAYGIDGFEEEDEPASEVEQDNDYYTTQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0246 368 Gene3D Classic Zinc Finger 204 227 - -
Lal20g0246 368 SUPERFAMILY beta-beta-alpha zinc fingers 201 227 IPR036236 -
Lal20g0246 368 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Lal20g0246 368 Gene3D Classic Zinc Finger 267 341 - -
Lal20g0246 368 MobiDBLite consensus disorder prediction 149 174 - -
Lal20g0246 368 SMART c2h2final6 289 309 IPR013087 -
Lal20g0246 368 SMART c2h2final6 205 227 IPR013087 -
Lal20g0246 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Lal20g0246 368 SUPERFAMILY beta-beta-alpha zinc fingers 271 309 IPR036236 -
Lal20g0246 368 MobiDBLite consensus disorder prediction 150 166 - -
Lal20g0246 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 289 309 IPR013087 -
Lal20g0246 368 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 10 363 - -
Lal20g0246 368 Coils Coil 109 129 - -
Lal20g0246 368 PANTHER ZINC FINGER PROTEIN WIP2 10 363 IPR043584 GO:0003700|GO:0010468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0246 Lal-Chr20 1743025 1745994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0246 1 368 C2H2 Transcription Factor Family AT3G57670 59.204 2.46e-145 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lal20g0246 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0246 - - vra:106771283 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0246 20 1743025 1745994 Lal20g0246 20 1743025 1745994 ECH
Lal20g0246 20 1743025 1745994 Lal25g0391 25 2631289 2634125 ECH
Lal20g0246 20 1743025 1745994 Lal10g1050 10 17541850 17544935 ECH
Lal11g1321 11 16807091 16809747 Lal20g0246 20 1743025 1745994 LSH
Lal1g1700 1 19447748 19450702 Lal20g0246 20 1743025 1745994 LSH