Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0243 ATGGAGATAGATAATAATTACAGTGATACAAGGTCCAAAAAGATGGAAGATTATGAAGTGATTGAGCAAATTGGTAGAGGAGCATTTGGTGCTGCCTTTTTGGTTCTTCATAAGTCTGAGAAAAAGAGGTATGTGTTGAAAAAGATTCGTGTGGCTAAGCAAACAGAGAAGCTCAAAAGAGCAGCACACCAAGAGATGAACCTGCTTGCAAAACTAAAAAATCCATATATCGTGGAGTACAAAGATGCTTGGGTGGAGAAAGAGGACCATATATGCATTATAACTGGCTATTGTGAAGGAGGGGACATGGCAGAGAACATAAAGGAAGCTCGGGGATCATTATTTCCCGAACAGAAGGTGTGCAAATGGCTGACTCAATTGTTGATAGCTGTGGACTACTTGCACTCTAATCGTGTAATCCACCGAGATCTTAAGTGCTCCAACATATTCCTCACCAAAGACAAGAACATTCGGCTTGGTGACTTTGGTCTTGCAAAGCGACTGAATACCGAAGACCTTACTTCCTCGGTTGTTGGAACTCCAAACTACATGTGCCCTGAGCTCCTTGCTGACATACCATATGGTTATAAATCTGATATGTGGTCACTCGGTTGCTGCTTGTTTGAGATTGCTGCACATCAACCTGCATTTCGTGCTCCGGACATGGGTGGACTTATCAATAAAATAAACAGATCCTCCATTTCTCCGCTGCCAATTGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAATCCAGAACATAGACCAACAGCAGCTGAATTGTTAAGGCATCCTCATTTACAACCCTATGTTCTTCGCTGTCAAAATGCATCATCTAATGTTCTTCCAGTATATCCCTTGGTTAACTCAAAGGATAAAACAAGATCACCTCATAAATCTAGTAGTGGATATGACCATGGGGATAGAGAAGCTGGATTAGTAAATCGTTTGGATCGAGTTCATCCAATTGAGGGAAATGGAGATGCACACCCAAGCAATGTTGCTAATGATGGTGAGCTAACGGTGTTAACCAGTGCAGAAAACAACCTTGAGACCAAGACCGTTTATCTGAGCAGCTACGTAGTGGAATCTAGTGCTAGTATCAGTGGCTCCAAAGATGGATCAACAACATCTGAATCAACTATCTGCAGTGTGTGCAAGGACACAGACTTTAAAAGTAGACCTGCAAGGGAAACGGCTGACAACAAGATCACTTCAAAGAGTACACAAGATTCTGTGCATGAGGAACAAGGACTTGCTGTTGAACATTTTCAGAAATTAGAAGTGATTGACATAAATGCAGTGACCGCAGAAGTTGAAGATTATTTTTCCAATGGAGGTTTTGATAATGTTGAAACACATAAGGAAGAAGCCAAACTCGAGGACTCTGGGAAATCTGCAATGTCAAGTGCAGGCAGTAGCAGCACTGATAAAGATAAGCTCATTGATACTGCCTCCATTGATAAAGATAAGTCCACTGATGAGGTAAGTTCATTACTGATTGTGCACCCTAGTAGGGCTGAAAATGACACTGAATCTGAAAACTGCTTTAAGAAAAGTGAAAATGCCGAAGCGTTTACAGAAGTCTTACATATGAACTGCTTTCCATCTGAAAATAATGAAACACTTCTAGTTAAGGATGAAGGCACGGCAAAAATACACATCACTACTTGCCCCACGCGTGAAGAAGATGATAGCGCCATTACCGCAACGAAGAATGTGTTGGATAATCCCTTGCAGCAAAGAGCTGATGCCTTGGAATCTCTGCTTGAGTTATGTGCTCAGCTACTTAAACAAGATAAACTTGAAGAGCTTGCTGGTGTGCTAAGACCATTTGGAAAAGAAGCTGTCTCTTCCAGAGAAACAGCAATATGGCTGACAAAGAGCCTCCTATCTGCTCAAAAGTTTAATCCTGAAACCTAG 1938 0.4143 MEIDNNYSDTRSKKMEDYEVIEQIGRGAFGAAFLVLHKSEKKRYVLKKIRVAKQTEKLKRAAHQEMNLLAKLKNPYIVEYKDAWVEKEDHICIITGYCEGGDMAENIKEARGSLFPEQKVCKWLTQLLIAVDYLHSNRVIHRDLKCSNIFLTKDKNIRLGDFGLAKRLNTEDLTSSVVGTPNYMCPELLADIPYGYKSDMWSLGCCLFEIAAHQPAFRAPDMGGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTAAELLRHPHLQPYVLRCQNASSNVLPVYPLVNSKDKTRSPHKSSSGYDHGDREAGLVNRLDRVHPIEGNGDAHPSNVANDGELTVLTSAENNLETKTVYLSSYVVESSASISGSKDGSTTSESTICSVCKDTDFKSRPARETADNKITSKSTQDSVHEEQGLAVEHFQKLEVIDINAVTAEVEDYFSNGGFDNVETHKEEAKLEDSGKSAMSSAGSSSTDKDKLIDTASIDKDKSTDEVSSLLIVHPSRAENDTESENCFKKSENAEAFTEVLHMNCFPSENNETLLVKDEGTAKIHITTCPTREEDDSAITATKNVLDNPLQQRADALESLLELCAQLLKQDKLEELAGVLRPFGKEAVSSRETAIWLTKSLLSAQKFNPET 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0243 645 MobiDBLite consensus disorder prediction 471 485 - -
Lal20g0243 645 ProSiteProfiles Protein kinase domain profile. 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0243 645 MobiDBLite consensus disorder prediction 293 316 - -
Lal20g0243 645 MobiDBLite consensus disorder prediction 399 419 - -
Lal20g0243 645 Gene3D Transferase(Phosphotransferase) domain 1 98 286 - -
Lal20g0243 645 CDD STKc_Nek 17 272 - -
Lal20g0243 645 Pfam Protein kinase domain 18 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0243 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Lal20g0243 645 Gene3D Phosphorylase Kinase; domain 1 1 97 - -
Lal20g0243 645 SUPERFAMILY Protein kinase-like (PK-like) 15 308 IPR011009 -
Lal20g0243 645 MobiDBLite consensus disorder prediction 459 486 - -
Lal20g0243 645 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 12 489 - -
Lal20g0243 645 PANTHER SERINE/THREONINE-KINASE NEK7-LIKE PROTEIN 501 628 - -
Lal20g0243 645 SMART serkin_6 18 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal20g0243 645 ProSitePatterns Protein kinases ATP-binding region signature. 24 53 IPR017441 GO:0005524
Lal20g0243 645 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 489 - -
Lal20g0243 645 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 501 628 - -
Lal20g0243 645 MobiDBLite consensus disorder prediction 297 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0243 Lal-Chr20 1718134 1724102 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0243 11 273 MAP Kinase Kinase Kinase AT3G13530 32.075 5.53e-36 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lal20g0243 Pkinase 3.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0243 K08857 - gmx:100793379 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0243 20 1718134 1724102 Lal20g0243 20 1718134 1724102 ECH
Lal11g1316 11 16784930 16791173 Lal20g0243 20 1718134 1724102 LSH