Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0242 ATGGCACCGAAGAAAAGAGCTAGGGTTTCCGACGAAGAACAAACGGAAGAAGATACTCAACAACAAAACAGCCTCTACGAGGTTCTTGGTGTGGAGAGAACAGCCTCTCGACAGGAAATAAAGAAGGCATACCACAAGTTGGCATTGCGGCTCCATCCTGATAAGAACCCTGACGATGAGCAAGCTAAAGAGAAATTCCAGCAACTGCAAAAAGTGATATCGATTCTTGGGGATGATGAGAAACGAGAACTTTATGACCAGACTGGTTGTGTTGATGATGATGACCTCTCTGGAGATGTTGTTCATAATCTTCATGAGTTTTTCAGAACAATGTACAAGAAGGTTACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTATAGAGGATCCGACTCAGAGAAAACTGATTTGATTGATCTTTACAAGAAGTACAAGGGTAATATGAACAGGCTTTTCTGTTCCATGCTTTGTTCAGACCGTAAACTTGACTCGCACCGATTCAAGGATATTCTCGACGAGGCTATAGCTGTTGGAGAGATAAAGGAAAGAAAAGCCTACCAGAAATGGGCAAAGGAGGTATCTGAAACCAAACCACCAACAAGTCCTTTAAGGAGGAGGAGGCCAAAGTCAAATAAGAAGCCAGATACTGATCTGTATGCAATCATTTCACAACGCCGAGATGAGAGGAAAGGACGGTTTGATTCAATGTTCTCATCTCTAATATCAAAATATGGTGGAAGTGATATGCCAGAACCCTCTGAGGAGGAATTCGAAGCTGCACAGAGAAAGCTGGAGAGTGGAAGATCCTCCAAAAAATCAAAGAAATCAAAGCAGAAGTAA 840 0.4214 MAPKKRARVSDEEQTEEDTQQQNSLYEVLGVERTASRQEIKKAYHKLALRLHPDKNPDDEQAKEKFQQLQKVISILGDDEKRELYDQTGCVDDDDLSGDVVHNLHEFFRTMYKKVTEADIEEFEANYRGSDSEKTDLIDLYKKYKGNMNRLFCSMLCSDRKLDSHRFKDILDEAIAVGEIKERKAYQKWAKEVSETKPPTSPLRRRRPKSNKKPDTDLYAIISQRRDERKGRFDSMFSSLISKYGGSDMPEPSEEEFEAAQRKLESGRSSKKSKKSKQK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0242 279 SUPERFAMILY Chaperone J-domain 23 109 IPR036869 -
Lal20g0242 279 SMART dnaj_3 23 81 IPR001623 -
Lal20g0242 279 MobiDBLite consensus disorder prediction 1 15 - -
Lal20g0242 279 MobiDBLite consensus disorder prediction 244 279 - -
Lal20g0242 279 MobiDBLite consensus disorder prediction 188 230 - -
Lal20g0242 279 Gene3D DnaJ domain 8 99 IPR036869 -
Lal20g0242 279 CDD DnaJ 26 78 IPR001623 -
Lal20g0242 279 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 4 275 - -
Lal20g0242 279 ProSiteProfiles dnaJ domain profile. 24 89 IPR001623 -
Lal20g0242 279 MobiDBLite consensus disorder prediction 210 230 - -
Lal20g0242 279 Pfam DnaJ domain 25 86 IPR001623 -
Lal20g0242 279 MobiDBLite consensus disorder prediction 1 22 - -
Lal20g0242 279 PRINTS DnaJ domain signature 26 44 IPR001623 -
Lal20g0242 279 PRINTS DnaJ domain signature 44 59 IPR001623 -
Lal20g0242 279 PRINTS DnaJ domain signature 61 81 IPR001623 -
Lal20g0242 279 PRINTS DnaJ domain signature 81 100 IPR001623 -
Lal20g0242 279 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 4 275 IPR042977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0242 Lal-Chr20 1712908 1716345 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0242 26 86 C2H2 Transcription Factor Family AT1G74250 37.879 3.74e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0242 K09529 - gmx:100793909 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0242 20 1712908 1716345 Lal20g0242 20 1712908 1716345 ECH
Lal11g1315 11 16781273 16783534 Lal20g0242 20 1712908 1716345 LSH