Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0241 ATGGGGTCCGGAGAGGGTGGATGTGGTCGTGAAATAATGGAGTCTCACGATGAGACAGGATGCCAAACACCAGAGCGCCCCATACTTTGCATTAATAATTGTGGCTTCTTCGGAAGGGCTGCTACCATGAACATGTGTTCCAAGTGCTACAAGGACACGCTGCTGAAGCAGGAGCAGGACAAGCTTGCTGCATCATCGGTTGAAAATATTGTGAATGGAACTTCTAAAGGCAATGGAAAACAGGTTGTGACTGCAGCTGCCATTGATGTGCAAGTTCAAACTGTTGAGGTAAACACAGTCTGTACTGAGATTTCTGCCGATTCATCCTCTGGCGAGAGTTTGCAAAGCAAAGCCAAAACAGGTCTCAGCAGATGCGCCACATGCAAGAAGCGTGTTGGGTTAACTGGTTTCAGCTGCAAATGTGGAAACCTCTTCTGTGCAATGCATCGCTATTCTGATAAACATGATTGCCAATTTGATTATAGGACTGTCGGTCAGGATGCTATAGCTAAAGCCAACCCCATAATTAAAGCCGATAAGCTTGAAAAAATCTAG 555 0.4577 MGSGEGGCGREIMESHDETGCQTPERPILCINNCGFFGRAATMNMCSKCYKDTLLKQEQDKLAASSVENIVNGTSKGNGKQVVTAAAIDVQVQTVEVNTVCTEISADSSSGESLQSKAKTGLSRCATCKKRVGLTGFSCKCGNLFCAMHRYSDKHDCQFDYRTVGQDAIAKANPIIKADKLEKI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0241 184 ProSiteProfiles Zinc finger A20-type profile. 24 58 IPR002653 GO:0003677|GO:0008270
Lal20g0241 184 Pfam AN1-like Zinc finger 125 161 IPR000058 GO:0008270
Lal20g0241 184 PANTHER AN1-TYPE ZINC FINGER PROTEIN 14 184 - -
Lal20g0241 184 SMART AN1_Zf_4 125 162 IPR000058 GO:0008270
Lal20g0241 184 SMART A20_3 27 51 IPR002653 GO:0003677|GO:0008270
Lal20g0241 184 SUPERFAMILY AN1-like Zinc finger 115 179 IPR035896 -
Lal20g0241 184 Pfam A20-like zinc finger 28 51 IPR002653 GO:0003677|GO:0008270
Lal20g0241 184 Gene3D - 99 180 IPR035896 -
Lal20g0241 184 ProSiteProfiles Zinc finger AN1-type profile. 119 165 IPR000058 GO:0008270
Lal20g0241 184 PANTHER ZINC FINGER A20 AND AN1 DOMAIN-CONTAINING STRESS-ASSOCIATED PROTEIN 8 14 184 - -
Lal20g0241 184 Gene3D - 13 73 - -
Lal20g0241 184 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 29 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0241 Lal-Chr20 1708095 1711427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0241 17 184 C2H2 Transcription Factor Family AT3G52800 42.012 2.99e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0241 - - gmx:100499995 306.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0241 20 1708095 1711427 Lal20g0241 20 1708095 1711427 ECH
Lal20g0241 20 1708095 1711427 Lal2g0195 2 1161307 1163427 ECH
Lal20g0241 20 1708095 1711427 Lal9g0198 9 1248082 1250154 ECH
Lal20g0241 20 1708095 1711427 Lal25g0389 25 2621185 2621703 ECH
Lal20g0241 20 1708095 1711427 Lal10g1053 10 17558941 17559459 ECH