Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0237 ATGGATCAACTTTTACTTGGATCCGCTCAAAACGACGTCGATTCAATTCAATTCAACCAACACATTCAAGGAATCATGGCTCCCGAAAACGCCACCTCCTTCACCGCGCTTCTTGAACTTCCTCCCATTCAGGCCGTCGAGCTTCTCCACTCTCCTGATTCCTCCGTCGCCGCTTCTCCGAAACCGCCTCTCATCAACCCCAAACCCTACCTCGTCAACGCTCTCACCGGTAATAACTTCACCTTCCCGTCAAACTCCGCGTTGATCGAACGCGCCGCGAAGTTCTCCGTGTTCGCCGGAGAGAACGCGTCGTCGTCGCCTGAGGAGGCGTGTTTGGTGGTTCCGGTTACTTCTGGCGATATGGTGAAAAACGAACCACAAGAGACCGATTCGAATCCTTGCTCCACGCAAGGGTGCGTTTCGGATCATGCTATTGAGAACACGAATAAGAGGAACGCGAAGAGGAAGGAACGAGAGAAGAAGGTTAAATCGTCGTCGAAGAAGAGTAAGAGCGCCGCCGATGAAAACTCCGGTGACGGCGAGAAGCTTCCGTACGTTCATGTTCGAGTTCGTCGAGGTCAAGCTACAGATAGCCATAGCTTAGCAGAAAGAGCTAGGAGAGAGAAAATCAATGCTCGGATGAAGCTTTTACAAGAGCTGGTCCCCGGTTGCAACAAGATATCAGGAACGGCATTGGTTCTCGATGAGATCATCAATCATGTGCAAAATCTACAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCATAGACAGCTTATTGGCTACTGATGGCGCATCTCTAGTGGACAGCAACTTACCTAGCATGGTTACACCTCTGATGTGGCCCGAAATCCCTGAAAATGGTAACAGACAGCATTATCAGCAGCAGTGGCAATATGATGCATTCCACCAACCACTTTGGGGAAGGGAAGAAGAGAACCGCAATTTCATGACTCCGGAAAACTCACTTTTGAGTTATGACTCGTCGGCAAATTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAGCTATGA 1065 0.4892 MDQLLLGSAQNDVDSIQFNQHIQGIMAPENATSFTALLELPPIQAVELLHSPDSSVAASPKPPLINPKPYLVNALTGNNFTFPSNSALIERAAKFSVFAGENASSSPEEACLVVPVTSGDMVKNEPQETDSNPCSTQGCVSDHAIENTNKRNAKRKEREKKVKSSSKKSKSAADENSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDEIINHVQNLQRQVEFLSMKLAAVNPRIDFSIDSLLATDGASLVDSNLPSMVTPLMWPEIPENGNRQHYQQQWQYDAFHQPLWGREEENRNFMTPENSLLSYDSSANSASLHSNQLKMEL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0237 354 MobiDBLite consensus disorder prediction 164 186 - -
Lal20g0237 354 Coils Coil 234 254 - -
Lal20g0237 354 MobiDBLite consensus disorder prediction 122 186 - -
Lal20g0237 354 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 10 354 IPR024097 GO:0006355
Lal20g0237 354 CDD bHLH_AtBPE_like 184 269 - -
Lal20g0237 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Lal20g0237 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 263 IPR036638 GO:0046983
Lal20g0237 354 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Lal20g0237 354 Gene3D - 191 263 IPR036638 GO:0046983
Lal20g0237 354 SMART finulus 200 250 IPR011598 GO:0046983
Lal20g0237 354 MobiDBLite consensus disorder prediction 122 146 - -
Lal20g0237 354 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 10 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0237 Lal-Chr20 1679558 1685060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0237 26 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.022 1.96e-100 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lal20g0237 HLH 2.4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0237 - - lang:109334778 552.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0237 20 1679558 1685060 Lal20g0237 20 1679558 1685060 ECH
Lal1g1707 1 19509930 19518093 Lal20g0237 20 1679558 1685060 LSH