Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0223 ATGGAACGTCAGGGTCATGATTATGCTGCAGCCTCTGCTATGGCATATGCGCAGCAGCAACGACAAGCTTCCAATATGCAACAGCATCAGCAGTTTGGATTTCATCCCCAGCATCAGCAGTTTCCTTCATCAGTGCATGGCCCGCCTTTTATACCCCCGGGTCCTGGTCCCGCACATCCCTCTCTGCAACAGTACCCGTATCACCATGCCCTGCAGCAGCAGCAACTTCAACAGTTACACTCTCATGCCGCCCCACCACCTCATCTTCTTCAGCAGCAACACCAAGGGCCACCCACGTTCCCTTCTCATTTTACTCCTTCTATTGTCCCGGCACCATTTTATGATTCTGCTCCACCACCAGTTGCACCCCCAACTGATCCCGAGCTCCATAAGCGAATTGACAAACTTGTTGAGTATGCTGTGAAAAATGGCCCTGACTTTGAAGCCATGATATGTGAAAAACAGAGAGATAATCCTTCCTATAGTTTCCTCTTTGGTGGGGAAGGCCATGCTTACTATCGTTACAAACTTTGGTTCTCAACACGTCCTCCAGGTGGTCCTTTCAACCCACCCTTTCAATCTTCTTCCATGCCCATGATCCATCCTCCTCCAAATCCAATGATGAGTTCATCTCCTCTAAATGCTCCTCCAATGAACTCTGCTGGTATTGGTTCTTCACCTTCAATGCTTGGTCCACCTCCTTATCAACAGTTCTATGATCAACAACATCACCATCAACATCCTCAGTCTTTTGGGCTTCATGGTCGACCTGAGTATGATCAGTCATCTCAATCTTTCAAAGGGCTCTCTGGGCCACTTCCATCTGATGTTGCAATGGAGCTCAGTAATGTTCTTAACAATCTGAATGGTACAAAGGAGTCTATTAAAGGTGCCAAACTTTGGTTCACACAGAGATCTCCATTTGCACCAGCTCTTGCACAGGCTCTTAGAGATAGAGTGTATCAATTGGATGACGTTGAAAGGCAGCTGCATATAATATATGTTGCTAATGACATTCTTTTTGACAGCTTGAATCGGAGAACGAGCAACCATGACCTCGACAATGAAGCCCTTGCATTTAAACCTGCTTTAGGATCCATGCTTGCAAGAATTTATCACAATCCACAAAGCAATGAAGAATATAGGAATAGACTGCACCAAATGGTGGAGTTCTGGGCTTCTAAAGAGATATATGATCAAGAGACTATATCTTTGCTGAAGGGTGAGATGATTGGTGGACTGCAAACACATTCTTTCCCTGGGGCTTCCAAGGATTTCTCGTCTGTTTCAGCAGATTCAGGTGCAGGAGTGCTGCAGACTCCCCCCAACCATATTGTCCAGCAGTGGCATGCTGATAGGCTGGGCTCTAATTCAGGTGTCTTAGAACAAGATCGTCTTGATAAACATCCAGCTCTCGGACAGTCCATGCCAATATCTCTGGCAGCTCAGCCATATCTTCCAAATTCTGCTCCTCCCGGTGCCTTTTCGGGGTCCATGCCTATACCATCTTCTGGTCAACCAGCTAATCAACCGCCAGGCGCACATTTATTGCCCAATCCATTGTCCGGCACCAGTGAACAATTACCACCATATCCATTGTTCCCTCCTGGCCTAATTCCTGGAATGGTTAGAAAGATGCAGATTGGTAGTGGGGTCCCATATTCTCCTATGAGCCCTTTGGACATCCCAACTATGATACCACCATCAACTGTACCACCATCAGAAATTCTTCAAAGAGTGTCAAAGTTTTTTAAAGAAATTGGAGAGGTTAACCCTTCTGAGGGCCCTATGAACTCTGATTCAAGAGATGAAGGTGATGATTATGACAGAGACTACGAGAGAGAGCCTCTGGTACGAAAGGGAGGCGCTTGCATACCTCCACCGCCAAATTTGCAGCAGGTTGATCCCGATACCGGAACGTTTGCTGATGGGACTGTAGATATGAAACCAGGATCAAGTAGCTCAGGAAGGTTGGGACTTGGGGCCACAGCCAATCCCAATGAGGGTGGTAGTGATTCTGAGGAGGAGGAGGAAGGAAGTGATTATGAAAACGAGGAGAGGGAAACTGAAGTAGCAGGCGAACCTTCTAATGCTGCTAAGTACATCCGGGGTAATGCAAGTGACAGCGATGACTCTGATGGAGAAAAGCGTGTTGTCAGGTCTGCAAAAGATAAGCGTTTCGAGGAGATGACTCTTACAGTCGACCAAATGAAGAATGCCATGAAGATTAATGACTGGGTCAGTTTGCAAGAGAGCTTTGACAAGATCAACAAACAGCTTGAGAAAGTTATGCGTGTTACTGAGTCTGACAAGGTCCCCAGTCTTTACATTAAGGCACTTGTGATGTTGGAAGACTTCTTGGCTCAGGCTTTGGCAAATAAGGAAGCCAAAAAGAAGATGAGTAGTAGCAATGCTAAGGCGTTGAACTCAATGAAGCAGAAATTGAAGAAAAACAATAAGCAGTATGAGGACTTGATCAATAAAAGCAGGGAGAGTCCTGAGAGTGATGGTGAAAAGGAAGAAGAGGAGGAGTCGGAAGAAGAGTATGAGAGCGACGATGAGGTTATCGAGCCAGATCAGCTTAGCAAGAATGTAAAAAAATCTGATTCTGAAGCTGATGGATATGATGATGATAATGCAGATGCTGCTGATGGACCATGGGATCAAAAGCTTAGCAAGAAAGATAGGCTTATGGATAAGCAATTTATGAAGGATCCTAGTGAGATTACTTGGGACATAGTTAACAAGAAGTTCAAAGAGGTTGTGGCCGCTAGGGGCAAGAAGGGCACTGGAAGGTTTGAACAGGTTGAACAGCTCACGTTCTTAACCAAAGTTGCTAAAACACCTGCACAGAAGCTGGAAATTGTCTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAACCCCGGCCTTAGTGGGCATATGCCGATAAATGTGTGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTCTAGTGCAGTACCCAAACATAGTGGCTGATGATTCAGTGGAGCCAAATGAGAATGAAACTCAGAAAGGAGCTGACTTTAATGGACCAATTCATGTTTGGGGTAACTTAGTTGCTTTCTTGGAAAAAATAGATGCCGAGTTTTTCAAGAGCCTACAGTGCATAGATCCTCATACCCGTGAGTATGTTGAGAGACTGAGGGATGAGCCTCTGTTTCAGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAAGAGTGGAGATTACAAATCTGCTTCTAAGGTAGCATTGAGGAGGGTTGAACTTATTTATTACAAACCACAAGAGGTTTATGATGCCATGAGAAAACTTGCTGAGCTCACAGAAGATGGAGATAATGGTGGGAAGGCAGGGGAGGAGTCCAAAGGGATTGAGTCAACAAGAATTCCTACTGCCTCTGTTGTTACTCCCGAGATTGTGCCCCGGAAGCCTACCTTTCCTGAGAGTAGCAGGACCCAAATGGACGTATTGGTATCACTGATATACAAATATGGCGATGAGCGCACTAAAGCACGGGCAATGCTTTGTGATATATATCATCATGCTCTTCGTGATGAGTTCTCAACTGCCCGCGATCTGCTACTTATGAGCCATTTGCAGGATAGTGTTCAGCATATGGACATTTCAACACAGATACTATTCAACAGGGCTATGTCACAGTTGGGTCTATGTGCTTTTCGTGTTGGACTGATTTCTGAAGCACATGGCTGTCTATCTGAACTTTATTCTGGTGGTAGGGTGAAGGAATTGCTTGCACAAGGTGTGTCTCAAAGTCGATATCACGAAAAGACTCCTGAACAGGAAAGATTGGAAAGACGACGTCAAATGCCATATCACATGCACATAAATCTTGAGCTCCTGGAGTCGGTGCATCTAATATCTGCTATGCTGCTGGAAGTTCCCAATATGGCTGCCAATGTTCATGACTCAAAGCGGAAAATCATTAGCAAGAATTTCCGCCGTTTGCTTGAGGTCAGTGACAGACAATCATTCACAGGGCCACCTGAAAATGTCAGAGATCACGTTATGGCTGCCACAAGGGCTCTGAACAAGGGAGACTTCCAGAAGGCTTATGATATTATTGTGTCTCTTGATGTGTGGAAATTTGTGAGAAATCGAGATGCTGTGCTTGAAATGCTGAAGTACAAAATCAAGGAAGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCCTCATATAATTCCTTGAGCCTGGATCAGCTCACAAAAATCTTTGACCTCTCTGTTACCCACACTCATAGCATTGTTAGTAAGATGATTATCAATGAGGAGCTTCATGCAAGCTGGGACCAGCCAACTGGGTGCATTGTCTTCCAGGATGTTGAGCACACTAGGTTGCAGGCATTGGCATTCCAGTTGACAGAGAAATTAACTATCCTTGCCGAGAATAATGAAAGAGCAACAGAGGCTAGGGTAGGTGGTGGATTGGATCTGCCTCTAAGGCGGAGGGATGGTCAGGACTATGCGGCTGCTGGTGGAACAGGCACTTTAGGCGGTGGCAGGTGGCAAGATTTGTCCCTTTCTCAGCCAAGGCAAGGAAGCGGTCGTGCAGGAGGATATGGTGGTGGTGGTGGAAGAGTATTCAATCAGGGAGGTGGTGGGTATTCAAGGGGGGACCGAGGCGGACGAGGTTACCAGACTACAAGGTATCAAGATACTGCAAATGGAGGGAGGAGTCAAGTTGGTTCAGCATTGAGGGGAACCCAGGGGGATATATCTACTCGTATGGTTAGCCTTAAGGGAGTTCGCTCCTAA 4788 0.4568 MERQGHDYAAASAMAYAQQQRQASNMQQHQQFGFHPQHQQFPSSVHGPPFIPPGPGPAHPSLQQYPYHHALQQQQLQQLHSHAAPPPHLLQQQHQGPPTFPSHFTPSIVPAPFYDSAPPPVAPPTDPELHKRIDKLVEYAVKNGPDFEAMICEKQRDNPSYSFLFGGEGHAYYRYKLWFSTRPPGGPFNPPFQSSSMPMIHPPPNPMMSSSPLNAPPMNSAGIGSSPSMLGPPPYQQFYDQQHHHQHPQSFGLHGRPEYDQSSQSFKGLSGPLPSDVAMELSNVLNNLNGTKESIKGAKLWFTQRSPFAPALAQALRDRVYQLDDVERQLHIIYVANDILFDSLNRRTSNHDLDNEALAFKPALGSMLARIYHNPQSNEEYRNRLHQMVEFWASKEIYDQETISLLKGEMIGGLQTHSFPGASKDFSSVSADSGAGVLQTPPNHIVQQWHADRLGSNSGVLEQDRLDKHPALGQSMPISLAAQPYLPNSAPPGAFSGSMPIPSSGQPANQPPGAHLLPNPLSGTSEQLPPYPLFPPGLIPGMVRKMQIGSGVPYSPMSPLDIPTMIPPSTVPPSEILQRVSKFFKEIGEVNPSEGPMNSDSRDEGDDYDRDYEREPLVRKGGACIPPPPNLQQVDPDTGTFADGTVDMKPGSSSSGRLGLGATANPNEGGSDSEEEEEGSDYENEERETEVAGEPSNAAKYIRGNASDSDDSDGEKRVVRSAKDKRFEEMTLTVDQMKNAMKINDWVSLQESFDKINKQLEKVMRVTESDKVPSLYIKALVMLEDFLAQALANKEAKKKMSSSNAKALNSMKQKLKKNNKQYEDLINKSRESPESDGEKEEEEESEEEYESDDEVIEPDQLSKNVKKSDSEADGYDDDNADAADGPWDQKLSKKDRLMDKQFMKDPSEITWDIVNKKFKEVVAARGKKGTGRFEQVEQLTFLTKVAKTPAQKLEIVFSVVSAQFDVNPGLSGHMPINVWKKCVQNMLIILDILVQYPNIVADDSVEPNENETQKGADFNGPIHVWGNLVAFLEKIDAEFFKSLQCIDPHTREYVERLRDEPLFQVLAQNVQEYLEKSGDYKSASKVALRRVELIYYKPQEVYDAMRKLAELTEDGDNGGKAGEESKGIESTRIPTASVVTPEIVPRKPTFPESSRTQMDVLVSLIYKYGDERTKARAMLCDIYHHALRDEFSTARDLLLMSHLQDSVQHMDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLESVHLISAMLLEVPNMAANVHDSKRKIISKNFRRLLEVSDRQSFTGPPENVRDHVMAATRALNKGDFQKAYDIIVSLDVWKFVRNRDAVLEMLKYKIKEEALRTYLFTFSSSYNSLSLDQLTKIFDLSVTHTHSIVSKMIINEELHASWDQPTGCIVFQDVEHTRLQALAFQLTEKLTILAENNERATEARVGGGLDLPLRRRDGQDYAAAGGTGTLGGGRWQDLSLSQPRQGSGRAGGYGGGGGRVFNQGGGGYSRGDRGGRGYQTTRYQDTANGGRSQVGSALRGTQGDISTRMVSLKGVRS 1595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0223 1595 SMART 558neu5 280 411 IPR006569 -
Lal20g0223 1595 Pfam PCI domain 1322 1450 IPR000717 -
Lal20g0223 1595 Gene3D - 278 415 IPR008942 -
Lal20g0223 1595 SMART PINT_4 1383 1471 IPR000717 -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 1557 1576 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 836 855 - -
Lal20g0223 1595 ProSiteProfiles CID domain profile. 273 414 IPR006569 -
Lal20g0223 1595 Pfam CID domain 280 404 IPR006569 -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 647 669 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 256 270 - -
Lal20g0223 1595 SMART surpneu2 130 182 IPR000061 GO:0003723|GO:0006396
Lal20g0223 1595 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 664 1529 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal20g0223 1595 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 707 1313 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal20g0223 1595 SUPERFAMILY Surp module (SWAP domain) 106 179 IPR035967 GO:0003723|GO:0006396
Lal20g0223 1595 MobiDBLite consensus disorder prediction 670 688 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 240 270 - -
Lal20g0223 1595 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 1383 1471 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 799 815 - -
Lal20g0223 1595 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT C 669 1592 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 706 721 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 816 835 - -
Lal20g0223 1595 SUPERFAMILY "Winged helix" DNA-binding domain 1381 1453 IPR036390 -
Lal20g0223 1595 Pfam Surp module 133 178 IPR000061 GO:0003723|GO:0006396
Lal20g0223 1595 MobiDBLite consensus disorder prediction 491 526 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 799 892 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 856 873 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 1518 1576 - -
Lal20g0223 1595 Gene3D - 1393 1457 IPR036388 -
Lal20g0223 1595 ProSiteProfiles SURP motif repeat profile. 132 176 IPR000061 GO:0003723|GO:0006396
Lal20g0223 1595 ProSiteProfiles PCI domain profile. 1282 1454 IPR000717 -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 588 721 - -
Lal20g0223 1595 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 669 1592 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Lal20g0223 1595 Coils Coil 805 832 - -
Lal20g0223 1595 MobiDBLite consensus disorder prediction 599 618 - -
Lal20g0223 1595 Gene3D Surp module 117 182 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0223 Lal-Chr20 1554786 1565242 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0223 670 1595 Eukaryotic Initiation Factors Gene Family AT3G56150 68.415 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0223 K03252 - gmx:100779751 1402.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0223 20 1554786 1565242 Lal20g0223 20 1554786 1565242 ECH
Lal11g1301 11 16675966 16680301 Lal20g0223 20 1554786 1565242 LSH