Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0221 ATGAACCATTATTATGTTAGCTTTTGGGTTTATTGTAATGGCACTTATGATGTTGCTAATTTTCTTCTGCATACTGATGCATCTTCTCCTCTCATACTAATACTTATCCATTTTATCGGCAGGATGGAGTCTGCAGTTAAGCATGCCGTTGTTGTCAAAGTCATGGGTCGTACTGGATCGAGAGGACAAGTGACCCAGGTCAGGGTGAAGTTTTTAGATGATCAGAACCGTCTGATTATGAGGAATGTGAAAGGACCAGTAAGAGAAGGAGATATTCTCACCCTCCTTGAGTCTGAGAGGGAGGCAAGAAGGATGGAATCTGCAGTTAAGCATGCCCTTGTTGTCAAAGTCATGGGTCGTACCGGATCCCGAGGACAGGTGACTCAGGTCCGGGTCAAGTTTATGGACGATCAGAACCGTCTGATTATGAGGAATGTGAAAGGACCAGTAAGAGAGGGAGATATTCTTACCCTCCTCGAGTCTGAGAGGGAGGCAAGAAGGTTGCGCTAG 510 0.4549 MNHYYVSFWVYCNGTYDVANFLLHTDASSPLILILIHFIGRMESAVKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVREGDILTLLESEREARRMESAVKHALVVKVMGRTGSRGQVTQVRVKFMDDQNRLIMRNVKGPVREGDILTLLESEREARRLR 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0221 169 Pfam Ribosomal protein S28e 46 105 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 Pfam Ribosomal protein S28e 109 168 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 CDD S1_S28E 110 169 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 SUPERFAMILY Nucleic acid-binding proteins 105 169 IPR012340 -
Lal20g0221 169 ProSitePatterns Ribosomal protein S28e signature. 160 168 IPR028626 -
Lal20g0221 169 Gene3D - 40 105 IPR012340 -
Lal20g0221 169 Gene3D - 106 169 IPR012340 -
Lal20g0221 169 CDD S1_S28E 55 104 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 PANTHER 40S RIBOSOMAL PROTEIN S28 105 169 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 PANTHER 40S RIBOSOMAL PROTEIN S28 42 105 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 SUPERFAMILY Nucleic acid-binding proteins 42 106 IPR012340 -
Lal20g0221 169 Hamap 30S ribosomal protein S28e [rps28e]. 96 169 IPR000289 GO:0003735|GO:0005840|GO:0006412
Lal20g0221 169 PANTHER 40S RIBOSOMAL PROTEIN S28 42 105 - -
Lal20g0221 169 PANTHER 40S RIBOSOMAL PROTEIN S28 105 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0221 Lal-Chr20 1543948 1547099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0221 105 169 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 86.154 1.16e-32 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0221 20 1543948 1547099 Lal20g0221 20 1543948 1547099 ECH