Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0211 ATGCCCAACTTCAAGATGAGGTACCTTTTGTCCAATCTCAGAAGAACACCAATGAAAAACACAAGAACCAAAAGCAGAATCAGAAACAAGAACATAGGCAAAATCAAAAACCAATCTTTCATTTCCACCACAAAAGAGTTACAATGTGTAGAAGAAGAAGAAAGTGATGAATGTTTCAGCCTCAAAAGCACTACCCCATCACACACTCATGGTGTTCAACCATTGGGTAATCTTTACCTCAGTTCAGGTTCCATCAATTCCAGAGACACAGGTTTAGGTAATCTTCACACCCTTTCAGATGAGCTTGTTCTTGAGATTCTAGGGTTTTTGGATGCTTCTGAATTAGGAGTTTTATCCACTGTAAGCAAATCACTTTATGTGTTTACTAACCATGAACCCCTTTGGAGGAATCTTGTGTTGGGGAATCTTGTTGATGGGTTTCACTTCAATGGGTTTTGGAAATCTACTTATGTTTCTGCTTGTTACCCTTCATTTGATTTGTTAAGTAATGAGCTTCAGAGTTTCAAAGTTAGAGACTTTTATTCTGATTATCTTTTCCAGAGTTGGCTCTGTGCTAATCTGGAAATGAAGCCTGAATGGTTGGAGAGGGATAATATAGTTAGGAAGAAAGGTATTTCAGTTGAGGAGTTTGTGTTGAACTTTGAGGAGCCAAATAAGCCGGTTTTGTTGGAAGGGTGTATTGATAATTGGGATGCATTGAGAAACTGGGATCGGGATTATTTGATGCGGTTGTGTGCTGATGTTAAGTTTTCTGTTGGGCCACTGGAGATGAAGCTCGAAGACTATTTTCGATACTCGGATCAAGTTAAAGAGGAAAGACCGTTGTATTTGTTCGATCCGAAATTTGCTGAGAAAGTTCCGAAGTTGGGTTCTGAGTATGAAGTACCAGCGTACTTCCAGGAGGACTTGTTTGGTGTTTTGGGCAATGGGAGACCTGATTATAGATGGGTTATTATTGGACCAGCTGGGTCTGGATCTTCTTTCCACGTAGATCCAAATTCGACTTCAGCTTGGAATGCAGTTATCACAGGATCCAAGAAATGGATATTATTTCCACCTGATGTGATTCCACCTGGAGTTCATCCTAGTCCCGATGGTGCCGAGGTTGCATCTCCTGTTTCAATAATCGAATGGTTCATGAACTTTTATGGTGCAACAAAGAATTGGAAAAAGAAACCAATTGAGTGTATATGCAAAGCTGGGGAGGTTATCTTTGTGCCTAACGGATGGTGGCATTTGGTGATCAACCTGGAGGAGTCTATAGCCATAACCCAAAACTACGTTAGCAGGAGAAATTTGTTAAATGTGTTGGATTTTCTTAAAAGGCCAAATGCTAGGACACTGGTATCTGGAACAAAGGATCGAGTGAATTTGTATGGTAAGTTTAAGAATGCCATTGATGCTTCTTTTCCAGGAACAATAGAAGCACTGACCCAAAAAGAAGAAGAGAAAAAGATGCAGCAAAAGAAACTTCCCTTCTGGGATTCTGTCACAGATGCTAACATGGGAGCTTTCAAGTTCTCTTTCTAG 1551 0.4023 MPNFKMRYLLSNLRRTPMKNTRTKSRIRNKNIGKIKNQSFISTTKELQCVEEEESDECFSLKSTTPSHTHGVQPLGNLYLSSGSINSRDTGLGNLHTLSDELVLEILGFLDASELGVLSTVSKSLYVFTNHEPLWRNLVLGNLVDGFHFNGFWKSTYVSACYPSFDLLSNELQSFKVRDFYSDYLFQSWLCANLEMKPEWLERDNIVRKKGISVEEFVLNFEEPNKPVLLEGCIDNWDALRNWDRDYLMRLCADVKFSVGPLEMKLEDYFRYSDQVKEERPLYLFDPKFAEKVPKLGSEYEVPAYFQEDLFGVLGNGRPDYRWVIIGPAGSGSSFHVDPNSTSAWNAVITGSKKWILFPPDVIPPGVHPSPDGAEVASPVSIIEWFMNFYGATKNWKKKPIECICKAGEVIFVPNGWWHLVINLEESIAITQNYVSRRNLLNVLDFLKRPNARTLVSGTKDRVNLYGKFKNAIDASFPGTIEALTQKEEEKKMQQKKLPFWDSVTDANMGAFKFSF 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0211 516 SUPERFAMILY Clavaminate synthase-like 207 456 - -
Lal20g0211 516 SMART fbox_2 98 138 IPR001810 GO:0005515
Lal20g0211 516 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 61 514 - -
Lal20g0211 516 Pfam F-box-like 100 140 IPR001810 GO:0005515
Lal20g0211 516 ProSiteProfiles F-box domain profile. 92 138 IPR001810 GO:0005515
Lal20g0211 516 Pfam Cupin-like domain 216 434 IPR041667 -
Lal20g0211 516 Gene3D Cupin 184 436 - -
Lal20g0211 516 Gene3D - 87 165 - -
Lal20g0211 516 PANTHER AND JMJC DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G08170)-RELATED 61 514 - -
Lal20g0211 516 ProSiteProfiles JmjC domain profile. 291 451 IPR003347 -
Lal20g0211 516 SMART cupin_9 282 451 IPR003347 -
Lal20g0211 516 SUPERFAMILY F-box domain 90 157 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0211 Lal-Chr20 1499793 1502204 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0211 83 440 Glycosyltransferase AT1G78280 36.585 1.04e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lal20g0211 Cupin_8 2.5e-22 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0211 - - lja:Lj1g3v4753250.1 853.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0211 20 1499793 1502204 Lal20g0211 20 1499793 1502204 ECH