Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0207 ATGGAGGTTCCGGAGATGGAAGGCAAGACTGAAACTCATATGACATCGGCTGCGGCCTTTGTGGAAGGGGGGATTCAAGAATCCTGTGACGATGCTTGCAGCATATGCCTTGAGGATTTTTGTGAAAGTGATCCTTCAACTGTCACTACTTGCAAGCATGAGTTTCACTTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCCCAGTGTCCTATGTGTTGGCAACCTATTGAACTGAAGGATCCTACCAGTCAAGAATTGTTCGAAGCGGTAGAGCATGAAAGGAGCTTGAGGGATACTCCATCAAGAAATGCTGCTATTTTCCGTCACCCTGCCCTTGGCGATTTTGACTTCCAGCAGTTACGCATTGGTGACTCTGATTTTGAAGAGCGAATAATTCAACATTTAGCTGCTGCTGCAGCAATGGGGAGAGCACAGCACCTTGGTCGGAGGGAAGGGCCGCGAACTAGATCATCTGCTCACGGTCATCCACATTTTTTAGTATTCTCAAATCACCGTAGTGCACCCTCAGGCCCGGATTCAAGTCGTGGAGGGGGAAATGAATCAGCTGCCGTTCCTATAGGAAGCTCATCTACCCTAACGACATCTGATAGAGATGTACCAACACAGCAGATACCACATCTTCAAACTCAAAGCTCTTCTCCAGCTTTTGGATCTAATGTCACAGCAACAAATCGTCAAGGAATATACTCTAGTGATAGAGGCTCTGGTGCTCATTCTTCACCAGTAAATCAAGATAATGCGGGCCCATCAGAATTCCAGTCATTTTCTGATTCCTTTCGATCAAGACTTAATGCGGTGTCCATGAGATACAAAGAGTCAATTTCAAAAGGCGCAAAGGGATGGAGGGAGAGGCTGTTCTCTCGTAGTTCTTCAATGTCAGAAGTTGGTTCAGAAGATAGGAGAGAGGAAAACGTTGGCATTGCCAGTGTATCCCCATTGGTGGAATCCCTTGAAACAAGAGAAAATAATAGAACTGTGGGTACTTCTTTGTCAAATCATTTCGAGGATCGCTCTATCACAGCAGAGGCAAGCAACCGGAATACTATGGAAGGTAGTGGAGAGAACTCATCGCATGATAACACTACTCCAGATGCTTGTCCTGCTGGCTCACATTCAAGTTGA 1146 0.4599 MEVPEMEGKTETHMTSAAAFVEGGIQESCDDACSICLEDFCESDPSTVTTCKHEFHLQCILEWCQRSSQCPMCWQPIELKDPTSQELFEAVEHERSLRDTPSRNAAIFRHPALGDFDFQQLRIGDSDFEERIIQHLAAAAAMGRAQHLGRREGPRTRSSAHGHPHFLVFSNHRSAPSGPDSSRGGGNESAAVPIGSSSTLTTSDRDVPTQQIPHLQTQSSSPAFGSNVTATNRQGIYSSDRGSGAHSSPVNQDNAGPSEFQSFSDSFRSRLNAVSMRYKESISKGAKGWRERLFSRSSSMSEVGSEDRREENVGIASVSPLVESLETRENNRTVGTSLSNHFEDRSITAEASNRNTMEGSGENSSHDNTTPDACPAGSHSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0207 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF2A 9 380 - -
Lal20g0207 381 MobiDBLite consensus disorder prediction 296 315 - -
Lal20g0207 381 Pfam Ring finger domain 32 73 IPR001841 -
Lal20g0207 381 SMART ring_2 33 73 IPR001841 -
Lal20g0207 381 SUPERFAMILY RING/U-box 25 81 - -
Lal20g0207 381 MobiDBLite consensus disorder prediction 326 381 - -
Lal20g0207 381 MobiDBLite consensus disorder prediction 191 262 - -
Lal20g0207 381 MobiDBLite consensus disorder prediction 168 262 - -
Lal20g0207 381 MobiDBLite consensus disorder prediction 144 163 - -
Lal20g0207 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 82 IPR013083 -
Lal20g0207 381 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Lal20g0207 381 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 9 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0207 Lal-Chr20 1465227 1470521 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0207 30 79 C3H Transcription Factor Family AT5G15790 46.000 1.08e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0207 K19043 - gmx:100800419 525.783
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0207 20 1465227 1470521 Lal20g0207 20 1465227 1470521 ECH
Lal1g1723 1 19662417 19667646 Lal20g0207 20 1465227 1470521 LSH