Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lal20g0202 | ATGAACAACACAACAGATTCTTCTTCTGCATTCCATAGCTATATCAACCTCAATAGTTATGGCTATGGCATAGCATTTTCCATTGGAATCATCCTTCTTATTCTAACCATAAGCCTCACCTCCTACTTTTGTACCAGATCACAAATACTATCTCTTCCATCTTCTACTCGGAGACATCTTCCTAATCTTCATTTCCTTGGATCACAGCAATCAATAGTTGATGTTGGGTTAGATGAAAACACTATTTTGAGTTATCCAAAGTTGCTTTATTCTGAAGCCAAGTTCAAGAAATTATCTGATTCCACTGCAACATGTTGCACTATATGTTTGAGTGATTATATGGGAAGTGATATGATTAGGGTTTTACCAGATTGTAGTCATCAATTTCATCTAAAGTGTATAGATCCATGGTTGAGATTGCATCCTACATGTCCAGTGTGTAGAACATCTCCATTACCAACACCACTCTCAACACCTATGGCTGAAGTTGTTCCATTAACAAACATGCAACATTCAAGTGAATCATAA | 528 | 0.3655 | MNNTTDSSSAFHSYINLNSYGYGIAFSIGIILLILTISLTSYFCTRSQILSLPSSTRRHLPNLHFLGSQQSIVDVGLDENTILSYPKLLYSEAKFKKLSDSTATCCTICLSDYMGSDMIRVLPDCSHQFHLKCIDPWLRLHPTCPVCRTSPLPTPLSTPMAEVVPLTNMQHSSES | 175 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lal20g0202 | 175 | SUPERFAMILY | RING/U-box | 105 | 153 | - | - | |
Lal20g0202 | 175 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 3 | 168 | IPR045899 | - | |
Lal20g0202 | 175 | SMART | ring_2 | 106 | 147 | IPR001841 | - | |
Lal20g0202 | 175 | PANTHER | RING-H2 FINGER PROTEIN ATL70-LIKE | 3 | 168 | - | - | |
Lal20g0202 | 175 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 148 | IPR001841 | - | |
Lal20g0202 | 175 | Pfam | Ring finger domain | 106 | 148 | IPR001841 | - | |
Lal20g0202 | 175 | CDD | RING-H2_PA-TM-RING | 105 | 148 | - | - | |
Lal20g0202 | 175 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 152 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lal20g0202 | Lal-Chr20 | 1426636 | 1427163 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lal20g0202 | 16 | 168 | C3H Transcription Factor Family | AT2G35910 | 60.390 | 3.66e-52 | 164 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lal20g0202 | - | - | lang:109348287 | 309.301 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lal11g1283 | 11 | 16504041 | 16504523 | Lal20g0202 | 20 | 1426636 | 1427163 | LSH | |
Lal20g0202 | 20 | 1426636 | 1427163 | Lal13g1305 | 13 | 11768882 | 11770480 | PCT | |
Lal13g1305 | 13 | 11768882 | 11770480 | Lal20g0202 | 20 | 1426636 | 1427163 | PCT |