Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0202 ATGAACAACACAACAGATTCTTCTTCTGCATTCCATAGCTATATCAACCTCAATAGTTATGGCTATGGCATAGCATTTTCCATTGGAATCATCCTTCTTATTCTAACCATAAGCCTCACCTCCTACTTTTGTACCAGATCACAAATACTATCTCTTCCATCTTCTACTCGGAGACATCTTCCTAATCTTCATTTCCTTGGATCACAGCAATCAATAGTTGATGTTGGGTTAGATGAAAACACTATTTTGAGTTATCCAAAGTTGCTTTATTCTGAAGCCAAGTTCAAGAAATTATCTGATTCCACTGCAACATGTTGCACTATATGTTTGAGTGATTATATGGGAAGTGATATGATTAGGGTTTTACCAGATTGTAGTCATCAATTTCATCTAAAGTGTATAGATCCATGGTTGAGATTGCATCCTACATGTCCAGTGTGTAGAACATCTCCATTACCAACACCACTCTCAACACCTATGGCTGAAGTTGTTCCATTAACAAACATGCAACATTCAAGTGAATCATAA 528 0.3655 MNNTTDSSSAFHSYINLNSYGYGIAFSIGIILLILTISLTSYFCTRSQILSLPSSTRRHLPNLHFLGSQQSIVDVGLDENTILSYPKLLYSEAKFKKLSDSTATCCTICLSDYMGSDMIRVLPDCSHQFHLKCIDPWLRLHPTCPVCRTSPLPTPLSTPMAEVVPLTNMQHSSES 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0202 175 SUPERFAMILY RING/U-box 105 153 - -
Lal20g0202 175 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 168 IPR045899 -
Lal20g0202 175 SMART ring_2 106 147 IPR001841 -
Lal20g0202 175 PANTHER RING-H2 FINGER PROTEIN ATL70-LIKE 3 168 - -
Lal20g0202 175 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Lal20g0202 175 Pfam Ring finger domain 106 148 IPR001841 -
Lal20g0202 175 CDD RING-H2_PA-TM-RING 105 148 - -
Lal20g0202 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0202 Lal-Chr20 1426636 1427163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0202 16 168 C3H Transcription Factor Family AT2G35910 60.390 3.66e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0202 - - lang:109348287 309.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal11g1283 11 16504041 16504523 Lal20g0202 20 1426636 1427163 LSH
Lal20g0202 20 1426636 1427163 Lal13g1305 13 11768882 11770480 PCT
Lal13g1305 13 11768882 11770480 Lal20g0202 20 1426636 1427163 PCT