Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0201 ATGTATATGGCGATGCAAAGTGTTTATCTTAAAGAGCATGAAGGAATTGCTCAGAATTCTGTTGGGAAATTGTTTCATGGAAGTTCAGCACCATGGTGGAGTGCTTTTGCATCTCAATCTGCTTATGCTGAGTCTTCTGGTCAAATGAAACCTTTTTCATTAGAGATTCCAAACTATGTAGACCAACTTGGTGCTACTAAATCAGCAATAGGAGCTGAACAAGTGTTTGGTAAAAGACATACAACCCAGTTTACCATCTTTCCAGATGTTTGTAAAATGTCAGGTGATGCACAAAAGCTTCAGACATTCATATCGCCACAGTCATCACTTACTGATACCAACACTCGTTTCGAGCTAGGATTTGGTCAGCCGATGATCTATGCAAAATATCCTTATGCTGACCAATTTTATGGACTCTTATCAACTTATGGACCTCAAATTCCGGGACGTATAATGCTTCCACTTGACATGACTTCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATCAGACGTAGGCAGTCCCGCGCCAAAGCTGTGCTTCATAACAACAAATTGACGAAACGTCGCAAGCCCTATATGCATGAATCACGTCATCGCCATGCAATGCGTCGACCAAGAGGATGTGGCGGCCGCTTCCTGAACACAAAGAATTCTGCTAAAACTGGGACTGAAGTGAATATAACTTGTGTTCAACAATTGTACTCCAGTGGCTCACAGGGTTCTGAAATTGTGCAATCAGAGGTTGGAACTTTGAATTCATCAAAGGAGACTAATGGAAGCAGTCCAAATATTTCAGGATCAGAGGTGACTAGCATGTATTTGCATGGAGGTCTCGACAGCTTCGCGTTCAATCATCTCGGTTCTGCAAATGTTCACTCTCTGGCTGACATGATCGACGGTGGGCGTGGTATCATTATGCCCACCAAATGGGTTGCAGCAGGGGCTAGCTGCTGCAACCTTAATGTTTGA 987 0.4306 MYMAMQSVYLKEHEGIAQNSVGKLFHGSSAPWWSAFASQSAYAESSGQMKPFSLEIPNYVDQLGATKSAIGAEQVFGKRHTTQFTIFPDVCKMSGDAQKLQTFISPQSSLTDTNTRFELGFGQPMIYAKYPYADQFYGLLSTYGPQIPGRIMLPLDMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHNNKLTKRRKPYMHESRHRHAMRRPRGCGGRFLNTKNSAKTGTEVNITCVQQLYSSGSQGSEIVQSEVGTLNSSKETNGSSPNISGSEVTSMYLHGGLDSFAFNHLGSANVHSLADMIDGGRGIIMPTKWVAAGASCCNLNV 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0201 328 ProSiteProfiles NF-YA/HAP2 family profile. 160 221 IPR001289 GO:0003700|GO:0006355
Lal20g0201 328 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 6 326 - -
Lal20g0201 328 Gene3D - 160 223 - -
Lal20g0201 328 MobiDBLite consensus disorder prediction 198 212 - -
Lal20g0201 328 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 218 IPR001289 GO:0003700|GO:0006355
Lal20g0201 328 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 6 326 IPR001289 GO:0003700|GO:0006355
Lal20g0201 328 SMART cbf3 159 221 IPR001289 GO:0003700|GO:0006355
Lal20g0201 328 MobiDBLite consensus disorder prediction 198 220 - -
Lal20g0201 328 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Lal20g0201 328 PRINTS CCAAT-binding transcription factor subunit B signature 195 218 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0201 Lal-Chr20 1410808 1414358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0201 1 326 CCAAT-HAP2 Transcription Factor Family AT3G05690 41.570 5.33e-64 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lal20g0201 CBFB_NFYA 8.8e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0201 K08064 - gmx:100527677 480.33