Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g0200 ATGAATGACTTATTCTCTAGTTCCTTCTCTGGCTTCCAATCCTCCCCAGACAACAACAACAACAACCATGTCATAGAAATGACCGAAACAACGTTGTCACAAGCCCCCAACCTAGAAAAATTCTTCTCCCAAGTTGAAACGGTGAAACAAGAACTCAAAGAACTTGAACTTCAACACAACAATCTCAAAACCTCTCATGAACTAAGCAAGACCCTTCACAGTGTCAAAGCTGTGAAGGATCTTCGCTGTAGCATGGATGCTGATGTGGCACTCTCGCTTAAGAAAGCCAAGCTCATTAAGTCCCAATTGGAGGCCCTGGACCAGTCCAACGAAGCGAGCCGATCCCTATCTGGCTTAGGGATCGGCTCATCATCGGACCGGACCAGGACCTCGGTTGTGAATGGGTTGAGGAAGAATATGAAGGATATGATGGATAGCTTTAATAGCTTGAGGGAGCAGATATCTTCTGAGTATAGAGAAACGGTGCAACGTAGATACTATACTGTTACTGGTGATAATGCTGATGATAAAACCATTGACCTTCTCATTTCTACAGGTGAGAGTGAAACTTTCTTACAGAAAGCAATCCAAGAACAAGGGAGAGCAAGCATAATGGACACAATACAAGAGATTGAAGAAAGACATGGTGCAGTGAAACAAATAGAGAGGAATTTAAATGAGTTGCATCAAGTGTTCTTGGACATGTCAGTGTTGGTCCAAACCCAAGGTGAACATTTAGATGATATAGAGAGCCACATGGCACGAGCTGATTCATACATAAGAGGTGGGGTCCAGCAGTTACAGGTTGCTAAGAAGCACCAGAAGAATACTCGTAAATGTACTTGTGTTGCAATTGTAGTGCTTCTCATTATCACATTGGTCATTGTTCTCCCTATTGTTTTGAAAAAATAA 912 0.4243 MNDLFSSSFSGFQSSPDNNNNNHVIEMTETTLSQAPNLEKFFSQVETVKQELKELELQHNNLKTSHELSKTLHSVKAVKDLRCSMDADVALSLKKAKLIKSQLEALDQSNEASRSLSGLGIGSSSDRTRTSVVNGLRKNMKDMMDSFNSLREQISSEYRETVQRRYYTVTGDNADDKTIDLLISTGESETFLQKAIQEQGRASIMDTIQEIEERHGAVKQIERNLNELHQVFLDMSVLVQTQGEHLDDIESHMARADSYIRGGVQQLQVAKKHQKNTRKCTCVAIVVLLIITLVIVLPIVLKK 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g0200 303 CDD SynN 38 195 IPR006011 GO:0016020
Lal20g0200 303 SMART SynN_4 33 159 IPR006011 GO:0016020
Lal20g0200 303 Gene3D - 197 301 - -
Lal20g0200 303 PANTHER SYNTAXIN 16 298 IPR045242 -
Lal20g0200 303 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Lal20g0200 303 PANTHER SYNTAXIN-121 16 298 - -
Lal20g0200 303 MobiDBLite consensus disorder prediction 1 23 - -
Lal20g0200 303 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lal20g0200 303 SMART tSNARE_6 203 270 IPR000727 -
Lal20g0200 303 SUPERFAMILY t-snare proteins 37 263 IPR010989 GO:0016020|GO:0016192
Lal20g0200 303 Coils Coil 38 65 - -
Lal20g0200 303 Pfam Syntaxin 40 243 IPR006011 GO:0016020
Lal20g0200 303 Pfam SNARE domain 246 296 IPR000727 -
Lal20g0200 303 CDD SNARE_syntaxin1-like 207 268 - -
Lal20g0200 303 Gene3D - 34 168 - -
Lal20g0200 303 Coils Coil 133 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g0200 Lal-Chr20 1404655 1407828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g0200 37 282 SNARE and Associated Proteins AT3G11820 69.919 2.36e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g0200 K08486 - gmx:100808718 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g0200 20 1404655 1407828 Lal20g0200 20 1404655 1407828 ECH